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13_2_20cm_2_scaffold_5516

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_5516_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(1..1056)
DNA (1056bp) protein (352aa)
rpoA; DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J0_GEMAT
DNA-directed RNA polymerase subunit alpha
13_2_20cm_2_scaffold_5516_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(1053..1688)
DNA (636bp) protein (212aa)
30S ribosomal protein S4 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J1_GEMAT
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Gemmatimonadetes_66_8_curated
ribosomal protein S4
13_2_20cm_2_scaffold_5516_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(1692..2090)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J2_GEMAT
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsK; 30S ribosomal protein S11
13_2_20cm_2_scaffold_5516_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(2091..2474)
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=2 Tax=Thermaerobacter RepID=E6SKX5_THEM7
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Ribosomal protein S13
13_2_20cm_2_scaffold_5516_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(2670..3104)
DNA (435bp) protein (145aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_2_20cm_2_scaffold_5516_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3101..3781)
DNA (681bp) protein (227aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23) Tax=RBG_16_Gemmatimonadetes_66_8_curated
pyrF; Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJP1_9BACT
13_2_20cm_2_scaffold_5516_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(3774..4634)
DNA (861bp) protein (287aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydroorotate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J6_GEMAT
Dihydroorotate dehydrogenase
13_2_20cm_2_scaffold_5516_8
unknown

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comp(4631..5944)
DNA (1314bp) protein (438aa)

This feature has no annotations

13_2_20cm_2_scaffold_5516_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(6053..7264)
DNA (1212bp) protein (404aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J7_GEMAT
13_2_20cm_2_scaffold_5516_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(7261..7716)
DNA (456bp) protein (152aa)
SsrA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J8_GEMAT
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
SsrA-binding protein
13_2_20cm_2_scaffold_5516_trna_1
unknown

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7809..7892
DNA (84bp)
transferRNA
13_2_20cm_2_scaffold_5516_11
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(7976..9409)
DNA (1434bp) protein (478aa)
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK99_CHLTF id=5224911 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
dinucleotide-utilizing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
molybdopterin and thiamine biosynthesis family dinucleotide-utilizing protein
13_2_20cm_2_scaffold_5516_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9400..9843)
DNA (444bp) protein (148aa)
Putative metal-dependent protease of the PAD1/JAB1 superfamily n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKA0_CHLTF
Predicted metal-dependent protease of the PAD1/JAB1 superfamily {ECO:0000313|EMBL:CDM66172.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrino
putative metal-dependent protease
13_2_20cm_2_scaffold_5516_13
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(9840..10799)
DNA (960bp) protein (320aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase {ECO:0000313|EMBL:AEP13588.1}; EC=2.5.1.47 {ECO:0000313|EMBL:AEP13588.1};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="
Cysteine synthase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKA1_CHLTF
13_2_20cm_2_scaffold_5516_14
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(10796..11647)
DNA (852bp) protein (284aa)
rhodanese-like domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Rhodanese domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJ99_RHOM4
rhodanese domain-containing protein
13_2_20cm_2_scaffold_5516_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11723..13582)
DNA (1860bp) protein (620aa)
Rrf2 family DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K0_GEMAT
Rrf2 family DNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Rrf2 family DNA-binding protein
13_2_20cm_2_scaffold_5516_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13605..15002)
DNA (1398bp) protein (466aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Aspartate ammonia-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K1_GEMAT
13_2_20cm_2_scaffold_5516_17
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(15118..15393)
DNA (276bp) protein (92aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Kted
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TI11_9CHLR
hypothetical protein
13_2_20cm_2_scaffold_5516_18
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15412..15660)
DNA (249bp) protein (83aa)
Alkylhydroperoxidase AhpD n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQL0_KORVE
alkylhydroperoxidase
Alkylhydroperoxidase AhpD {ECO:0000313|EMBL:ABF40840.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (str
13_2_20cm_2_scaffold_5516_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15657..15950)
DNA (294bp) protein (98aa)
Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_2_20cm_2_scaffold_5516_20
unknown

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15973..16611
DNA (639bp) protein (213aa)

This feature has no annotations

13_2_20cm_2_scaffold_5516_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(16586..17224)
DNA (639bp) protein (213aa)
beta-lactamase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
beta-lactamase domain protein
Beta-lactamase-like id=2157798 bin=GWD2_Nitrospirae-related_57_8 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
13_2_20cm_2_scaffold_5516_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17336..18064)
DNA (729bp) protein (243aa)
TrxB2; thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RBG_16_Gemmatimonadetes_66_8_curated
trxB; thioredoxin reductase TrxB (EC:1.8.1.9)
Thioredoxin reductase n=2 Tax=Bacillus RepID=R9TZH3_BACLI
13_2_20cm_2_scaffold_5516_23
unknown

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comp(18045..18239)
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying 24 items

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