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13_2_20cm_2_scaffold_562

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_562_1
unknown

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comp(258..734)
DNA (477bp) protein (159aa)

This feature has no annotations

13_2_20cm_2_scaffold_562_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1646..2716
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA17_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
permease YjgP/YjgQ family protein
13_2_20cm_2_scaffold_562_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2786..6031)
DNA (3246bp) protein (1082aa)
TonB-dependent outer membrane receptor Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
rmg:Rhom172_0311 TonB-dependent outer membrane receptor id=719545 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria rbh
hypothetical protein
13_2_20cm_2_scaffold_562_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(6121..7491)
DNA (1371bp) protein (457aa)
Putative permease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA22_GEMAT
putative permease; K03294 basic amino acid/polyamine antiporter, APA family Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative permease
13_2_20cm_2_scaffold_562_5
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(7540..7851)
DNA (312bp) protein (104aa)
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1N8_ACIC5
ECF subfamily RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:ACO32741.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacteriu
13_2_20cm_2_scaffold_562_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

8014..8874
DNA (861bp) protein (287aa)
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-)
Protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L3N1_THERP
cytochrome oxidase assembly family protein; K02259 cytochrome c oxidase assembly protein subunit 15 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_2_20cm_2_scaffold_562_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8903..9265)
DNA (363bp) protein (121aa)
putative M24 family peptidase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M24
peptidase M24 id=1250273 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
13_2_20cm_2_scaffold_562_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9959..10564)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA29_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_2_scaffold_562_9
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

10635..11243
DNA (609bp) protein (203aa)
RNA polymerase sigma factor n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A135_MELRP
RNA polymerase sigma factor RpoE
Tax=BJP_IG2158_Zixibacteria_48_33
13_2_20cm_2_scaffold_562_10
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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11240..11464
DNA (225bp) protein (75aa)
Anti-sigma factor n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FRJ6_ISOV2
anti-sigma factor
Anti-sigma factor {ECO:0000313|EMBL:AEG45054.1}; TaxID=743718 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
13_2_20cm_2_scaffold_562_11
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

11461..12147
DNA (687bp) protein (229aa)
hypothetical protein id=14430416 bin=bin3_NC10 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_3_Armatimonadetes
hypothetical protein
13_2_20cm_2_scaffold_562_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12161..13399
DNA (1239bp) protein (413aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA31_GEMAT
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
monooxygenase FAD-binding protein
13_2_20cm_2_scaffold_562_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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13404..13889
DNA (486bp) protein (162aa)
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
flavin reductase domain-containing protein id=14625818 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
flavin reductase domain protein FMN-binding protein
13_2_20cm_2_scaffold_562_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13886..14581
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA33_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Methyltransferase type 11
13_2_20cm_2_scaffold_562_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14560..15015
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA34_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Polyketide cyclase/dehydrase
13_2_20cm_2_scaffold_562_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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15055..16275
DNA (1221bp) protein (407aa)
fabF; 3-oxoacyl-ACP synthase II (EC:2.3.1.179); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=GWC2_Gemmatimonadetes_71_10_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA35_GEMAT
3-oxoacyl-[acyl-carrier-protein] synthase 2
13_2_20cm_2_scaffold_562_17
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

16350..17036
DNA (687bp) protein (229aa)
MIP family channel protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBS8_9CHLR
MIP family channel protein {ECO:0000313|EMBL:EFH89860.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter ra
MIP family channel protein
13_2_20cm_2_scaffold_562_18
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(17080..18051)
DNA (972bp) protein (324aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="unc
delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SPN3_9BACT
13_2_20cm_2_scaffold_562_19
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(18048..18974)
DNA (927bp) protein (309aa)
Porphobilinogen deaminase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000255|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000255|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000255|HAM
Porphobilinogen deaminase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=HEM3_PELCD
hemC; hydroxymethylbilane synthase
13_2_20cm_2_scaffold_562_20
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(18971..19804)
DNA (834bp) protein (278aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=CG_Arma_01
porphyrin biosynthesis protein HemD n=1 Tax=Selenomonas bovis RepID=UPI00037F4D44
uroporphyrin-III C-methyltransferase
13_2_20cm_2_scaffold_562_21
unknown

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19823..20407
DNA (585bp) protein (195aa)

This feature has no annotations

13_2_20cm_2_scaffold_562_22
unknown

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comp(20404..20544)
DNA (141bp) protein (47aa)

This feature has no annotations

13_2_20cm_2_scaffold_562_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(20507..21190)
DNA (684bp) protein (228aa)
Heme exporter protein CcmC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA41_GEMAT
heme exporter protein C; K02195 heme exporter protein C Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cytochrome c assembly protein
13_2_20cm_2_scaffold_562_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(21187..21867)
DNA (681bp) protein (227aa)
Heme exporter protein CcmB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA42_GEMAT
ccmB; heme exporter protein CcmB; K02194 heme exporter protein B Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cytochrome c-type biogenesis protein CcmB
13_2_20cm_2_scaffold_562_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21860..22561)
DNA (702bp) protein (234aa)
heme ABC exporter, ATP-binding protein CcmA; K09687 antibiotic transport system ATP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
multidrug ABC transporter ATPase; K09687 antibiotic transport system ATP-binding protein id=14630965 bin=bin9_gal15 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin9_gal15 organism_group=GAL15
cytochrome ABC transporter ATP-binding component
13_2_20cm_2_scaffold_562_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(22548..22922)
DNA (375bp) protein (125aa)
two-component response regulator protein; K15012 two-component system, response regulator RegA Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative Histidine kinase id=4097828 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two-component systen response regulator
13_2_20cm_2_scaffold_562_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(22967..23278)
DNA (312bp) protein (104aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_2_20cm_2_scaffold_562_28
RLO_PLX_64_10, Bacteria

Not on your lists

23562..24476
DNA (915bp) protein (305aa)
Acetyl-coenzyme A synthetase n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YGD8_9DELT
acetate--CoA ligase Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
acetate--CoA ligase
Displaying 28 items

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