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13_2_20cm_2_scaffold_609

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_609_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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2..1411
DNA (1410bp) protein (470aa)
Bacterial surface antigen (D15) family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R7_GEMAT
surface antigen; K07277 outer membrane protein Tax=GWC2_Gemmatimonadetes_71_10_curated
outer membrane protein assembly complex, YaeT protein
13_2_20cm_2_scaffold_609_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1427..1837
DNA (411bp) protein (137aa)
outer membrane chaperone skp (omph); K06142 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_2_20cm_2_scaffold_609_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1852..2961
DNA (1110bp) protein (370aa)
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-); K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] Tax=GWC2_Gemmatimonadetes_71_10_curated
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R9_GEMAT
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
13_2_20cm_2_scaffold_609_4
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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2945..3391
DNA (447bp) protein (149aa)
ial:IALB_0578 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] id=718580 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Tax=RBG_13_Ignavibacteria_36_8_curated
13_2_20cm_2_scaffold_609_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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3330..4094
DNA (765bp) protein (255aa)
lpxC/fabZ; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase (EC:3.5.1.- 4.2.1.-); K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-];
lpxC_fabZ; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase (EC:3.5.1.- 4.2.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S0_GEMAT
13_2_20cm_2_scaffold_609_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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4091..4858
DNA (768bp) protein (256aa)
lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=379066 species="Bacteria; Gemmatimonadetes;
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S1_GEMAT
13_2_20cm_2_scaffold_609_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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4855..5859
DNA (1005bp) protein (335aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S2_GEMAT
oxidoreductase domain protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AHG90760.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_609_8
unknown

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comp(5760..6344)
DNA (585bp) protein (195aa)

This feature has no annotations

13_2_20cm_2_scaffold_609_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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6382..6831
DNA (450bp) protein (150aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] Tax=GWC2_Gemmatimonadetes_71_10_curated
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S3_GEMAT
13_2_20cm_2_scaffold_609_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6828..7463
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4M9_9PROT id=5224129 bin=16ft_combo_ws3_JS1 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein; K09778 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF374
13_2_20cm_2_scaffold_609_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7460..8482
DNA (1023bp) protein (341aa)
lpxK; tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetraacyldisaccharide 4'-kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S5_GEMAT
Tetraacyldisaccharide 4'-kinase
13_2_20cm_2_scaffold_609_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8506..10200
DNA (1695bp) protein (565aa)
Glutamate dehydrogenase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLI2_CHLTF
Glu/Leu/Phe/Val dehydrogenase
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_609_13
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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10307..10756
DNA (450bp) protein (150aa)
AMMECR1 containing protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7VHA1_9DELT
AMMECR1 domain-containing protein; K06990 Tax=RBG_16_Spirochaete_67_19_curated
hypothetical protein
13_2_20cm_2_scaffold_609_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

10753..12180
DNA (1428bp) protein (476aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein id=24468235 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
protein of unknown function UCP012535
13_2_20cm_2_scaffold_609_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12190..12471
DNA (282bp) protein (94aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_2_20cm_2_scaffold_609_16
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12474..14057
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S9_GEMAT
hypothetical protein
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca
13_2_20cm_2_scaffold_609_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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14024..15757
DNA (1734bp) protein (578aa)
UvrABC system protein C n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=UVRC_GEMAT
uvrC; UvrABC system protein C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
UvrABC system protein C
13_2_20cm_2_scaffold_609_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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15795..16709
DNA (915bp) protein (305aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative threonine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T1_GEMAT
Pyridoxal-5'-phosphate-dependent protein beta subunit
13_2_20cm_2_scaffold_609_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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16871..18055
DNA (1185bp) protein (395aa)
UPF0272 protein Moth_2512 n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Y2512_MOOTA id=5223158 bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TIGR00299 family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UPF0272 protein
13_2_20cm_2_scaffold_609_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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18058..19581
DNA (1524bp) protein (508aa)
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_2_20cm_2_scaffold_609_trna_1
unknown

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19639..19710
DNA (72bp)
transferRNA
13_2_20cm_2_scaffold_609_21
CSP1_5_NC10, NC10, Bacteria

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19860..20513
DNA (654bp) protein (218aa)
two component LuxR family transcriptional regulator id=14430684 bin=bin3_NC10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin3_NC10 organism_group=NC10
two component LuxR family transcriptional regulator Tax=CSP1_5_NC10
LuxR family transcriptional regulator
13_2_20cm_2_scaffold_609_22
RLO_PLX_64_10, Bacteria

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20738..28078
DNA (7341bp) protein (2447aa)
YD repeat protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6T0_DESAT rbh
wapA_[H]; YD repeat protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein
13_2_20cm_2_scaffold_609_23
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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28242..28580
DNA (339bp) protein (113aa)
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_2_20cm_2_scaffold_609_24
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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28966..35196
DNA (6231bp) protein (2077aa)
YD repeat protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DUX3_THIND
wapA_[H]; YD repeat protein
YD repeat protein {ECO:0000313|EMBL:AGA32795.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibri
13_2_20cm_2_scaffold_609_25
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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35186..36910
DNA (1725bp) protein (575aa)
YD repeat protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6T0_DESAT
hypothetical protein Tax=RBG_16_Gammaproteobacteria_57_12_curated
hypothetical protein
13_2_20cm_2_scaffold_609_26
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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37253..38455
DNA (1203bp) protein (401aa)
General secretory pathway component, cryptic id=3979146 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
gspF; general secretory pathway component, cryptic Tax=GWC2_Rokubacteria_70_16_curated
Type II secretion system F domain-containing protein
13_2_20cm_2_scaffold_609_27
Pseudomonas amygdali, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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38479..38976
DNA (498bp) protein (166aa)
Type IV pilin n=1 Tax=Pseudomonas syringae pv. lachrymans str. M301315 RepID=F3EL39_PSESL
Type IV pilin {ECO:0000313|EMBL:EGH03887.1}; TaxID=629258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas amygdali.;" source="Pseudo
type IV pilin
13_2_20cm_2_scaffold_609_28
unknown

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38954..39358
DNA (405bp) protein (135aa)

This feature has no annotations

13_2_20cm_2_scaffold_609_29
unknown

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39355..39960
DNA (606bp) protein (202aa)

This feature has no annotations

Displaying items 1-30 of 37 in total

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