ggKbase home page

13_2_20cm_2_scaffold_653

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_653_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

1..363
DNA (363bp) protein (121aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
3-dehydroquinate synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y5_GEMAT
3-dehydroquinate synthase
13_2_20cm_2_scaffold_653_2
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(403..633)
DNA (231bp) protein (77aa)
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
13_2_20cm_2_scaffold_653_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

917..1810
DNA (894bp) protein (298aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y4_GEMAT
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor
13_2_20cm_2_scaffold_653_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

1952..2638
DNA (687bp) protein (229aa)
Peptidase S16, lon domain protein {ECO:0000313|EMBL:CDM66852.1}; EC=3.4.21.53 {ECO:0000313|EMBL:CDM66852.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;"
ATP-dependent protease La n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFU6_9BACT
peptidase S16 lon domain protein
13_2_20cm_2_scaffold_653_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2638..4146
DNA (1509bp) protein (503aa)
glcD; glycolate oxidase subunit GlcD; K00104 glycolate oxidase [EC:1.1.3.15] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Glycolate oxidase subunit GlcD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y2_GEMAT
glcD; glycolate oxidase subunit GlcD
13_2_20cm_2_scaffold_653_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

4143..5354
DNA (1212bp) protein (404aa)
Glycolate oxidase subunit n=1 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Q8YZ63_NOSS1
glcE; glycolate oxidase subunit Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glcE; glycolate oxidase subunit
13_2_20cm_2_scaffold_653_7
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5364..6623
DNA (1260bp) protein (420aa)
Glycolate oxidase iron-sulfur subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y0_GEMAT
glcF; glycolate oxidase iron-sulfur subunit
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas auran
13_2_20cm_2_scaffold_653_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6630..7310
DNA (681bp) protein (227aa)
putative beta-phosphoglucomutase (EC:5.4.2.6) Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
putative beta-phosphoglucomutase (EC:5.4.2.6)
Putative Beta-phosphoglucomutase id=1969952 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_2_20cm_2_scaffold_653_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

7407..8252
DNA (846bp) protein (282aa)
Putative aminomethyl transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5X8_GEMAT
putative aminomethyl transferase; K06980 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative aminomethyl transferase
13_2_20cm_2_scaffold_653_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8249..9256
DNA (1008bp) protein (336aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPZ4_SINAD
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGA30908.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Sin
13_2_20cm_2_scaffold_653_11
unknown

Not on your lists

comp(9292..9525)
DNA (234bp) protein (78aa)

This feature has no annotations

13_2_20cm_2_scaffold_653_12
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9666..13883
DNA (4218bp) protein (1406aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035CAE18
glycosyl hydrolases 38-like Tax=RBG_16_Planctomycetes_64_12_curated
glycosyl hydrolases 38-like
13_2_20cm_2_scaffold_653_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

13987..14904
DNA (918bp) protein (306aa)
slr1768; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_2_20cm_2_scaffold_653_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

14908..15543
DNA (636bp) protein (212aa)
Cytidylate kinase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TD61_9CHLR
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Cytidylate kinase-like family
13_2_20cm_2_scaffold_653_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15551..17827
DNA (2277bp) protein (759aa)
Serine/threonine protein kinase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFQ2_9BACT
serine/threonine protein kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
protein kinase
13_2_20cm_2_scaffold_653_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

17796..19010
DNA (1215bp) protein (405aa)
PDZ/DHR/GLGF domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QG0_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE84098.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
13_2_20cm_2_scaffold_653_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(19036..20259)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XTG8_SORCE
major facilitator superfamily protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_2_20cm_2_scaffold_653_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

20304..21602
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W8_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
von Willebrand factor type A
13_2_20cm_2_scaffold_653_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

21614..23269
DNA (1656bp) protein (552aa)
Regulator of chromosome condensation RCC1 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G4X1_CHLAD
regulator of chromosome condensation RCC1 Tax=GWC2_Gemmatimonadetes_71_10_curated
regulator of chromosome condensation, RCC1
13_2_20cm_2_scaffold_653_20
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23281..24165)
DNA (885bp) protein (295aa)
Beta-lactamase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QP24_9DELT
Beta-lactamase {ECO:0000313|EMBL:EPX58313.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter
beta-lactamase
13_2_20cm_2_scaffold_653_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

24239..27829
DNA (3591bp) protein (1197aa)
2-oxoglutarate dehydrogenase, E1 subunit; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] Tax=GWC2_Gemmatimonadetes_71_10_curated
2-oxoglutarate dehydrogenase, E1 subunit n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCK1_CONWI
2-oxoglutarate dehydrogenase, E1 subunit
13_2_20cm_2_scaffold_653_22
CSP1_5_NC10, NC10, Bacteria

Not on your lists

27837..28634
DNA (798bp) protein (266aa)
Kelch repeat-containing protein id=14429662 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Kelch repeat-containing protein Tax=CSP1_5_NC10
Kelch repeat-containing protein
13_2_20cm_2_scaffold_653_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

28642..29217
DNA (576bp) protein (192aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5S9_GEMAT
hypothetical membrane protein; K02221 YggT family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function YGGT
13_2_20cm_2_scaffold_653_24
unknown

Not on your lists

29318..29470
DNA (153bp) protein (51aa)

This feature has no annotations

13_2_20cm_2_scaffold_653_25
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29500..30537)
DNA (1038bp) protein (346aa)
qxtB; terminal oxidase subunit II (EC:1.10.3.-)
Probable terminal oxidase subunit II n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G2B1_SORC5
Cytochrome bd ubiquinol oxidase, subunit II {ECO:0000313|EMBL:EYF02949.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces
13_2_20cm_2_scaffold_653_26
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30542..31900)
DNA (1359bp) protein (453aa)
cytochrome BD ubiquinol oxidase subunit I n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6CDCA
cytochrome bd ubiquinol oxidase subunit I
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:ACL64348.1}; Flags: Precursor;; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaerom
13_2_20cm_2_scaffold_653_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(31921..32748)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJK9_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_2_scaffold_653_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

33064..34608
DNA (1545bp) protein (515aa)
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; K00547 homocysteine S-methyltransferase [EC:2.1.1.10] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_cura
Methylenetetrahydrofolate reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5U0_GEMAT
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
13_2_20cm_2_scaffold_653_29
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34751..35287
DNA (537bp) protein (179aa)
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein LinasL1_09615 id=3960252 bin=GWA2_Methylomirabilis_73_35 species=Sphingopyxis sp. MC1 genus=Sphingopyxis taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_653_30
GWA2_OD1_47_21_part, Parcubacteria, Bacteria

Not on your lists

35317..35535
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU70515.1}; TaxID=1618843 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_21.;"
integral membrane protein
putative integral membrane protein id=5045771 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Displaying items 1-30 of 33 in total

View Taxonomy