ggKbase home page

13_1_40cm_2_scaffold_104

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_104_1
unknown

Not on your lists

comp(1..624)
DNA (624bp) protein (208aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_2
unknown

Not on your lists

comp(621..1040)
DNA (420bp) protein (140aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(1164..3287)
DNA (2124bp) protein (708aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJI6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60175.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_2_scaffold_104_4

Not on your lists

comp(3415..4431)
DNA (1017bp) protein (339aa)
Putative methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.2
S-methyl-5-thioribose-1-phosphate isomerase (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHQ3_NITGG
13_1_40cm_2_scaffold_104_5
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

4556..5137
DNA (582bp) protein (194aa)
tRNA-splicing endonuclease subunit beta; K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] Tax=RBG_16_Archaea_50_20_curated
tRNA intron endonuclease n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U2G4_9ARCH
tRNA intron endonuclease, catalytic domain-containing protein
13_1_40cm_2_scaffold_104_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


5150..6466
DNA (1317bp) protein (439aa)
hisS; histidine--tRNA ligase (EC:6.1.1.21) Tax=RBG_16_Archaea_50_20_curated
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR5_NITGG
13_1_40cm_2_scaffold_104_7
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

6647..7327
DNA (681bp) protein (227aa)
Chorismate synthase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5STN4_9BACT
hypothetical protein Tax=RBG_16_KB1_OP1_55_9_curated
hypothetical protein
13_1_40cm_2_scaffold_104_8
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

7337..8446
DNA (1110bp) protein (370aa)
o-succinylbenzoate synthase {ECO:0000256|HAMAP-Rule:MF_01933}; Short=OSB synthase {ECO:0000256|HAMAP-Rule:MF_01933};; Short=OSBS {ECO:0000256|HAMAP-Rule:MF_01933};; EC=4.2.1.113 {ECO:0000256|HAMAP-Rul
O-succinylbenzoate synthase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SF69_9BACT
menC; O-succinylbenzoate synthase
13_1_40cm_2_scaffold_104_9
unknown

Not on your lists

comp(8812..9666)
DNA (855bp) protein (285aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_10

Not on your lists

comp(9869..10669)
DNA (801bp) protein (267aa)
ABC-2 type transporter n=2 Tax=mine drainage metagenome RepID=T1B4C5_9ZZZZ
ABC-2 type transporter {ECO:0000313|EMBL:EQD47639.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter permease
13_1_40cm_2_scaffold_104_11
Aeropyrum camini, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(10726..11556)
DNA (831bp) protein (277aa)
ABC transporter permease n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3TBY6_9CREN
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:BAN91052.1}; TaxID=1198449 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum camini SY1 =
13_1_40cm_2_scaffold_104_12
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(11553..12584)
DNA (1032bp) protein (344aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZT4_ANATU
putative ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAJ62269.1}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolin
13_1_40cm_2_scaffold_104_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(12658..13083)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIT9_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_40cm_2_scaffold_104_14
unknown

Not on your lists

13158..13388
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(13391..14197)
DNA (807bp) protein (269aa)
Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_2_scaffold_104_trna_1
unknown

Not on your lists

14347..14476
DNA (130bp)
transferRNA
13_1_40cm_2_scaffold_104_16
Thermofilum sp. 1807-2, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

14685..15326
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RX11_THEPD
Uncharacterized protein {ECO:0000313|EMBL:AKG39238.1}; TaxID=1550241 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum sp. 1807-2.;"
hypothetical protein
13_1_40cm_2_scaffold_104_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15355..16605)
DNA (1251bp) protein (417aa)
sodium/calcium exchanger membrane region; K07301 inner membrane protein Tax=RBG_16_Acidobacteria_70_10_curated
sodium/calcium exchanger membrane region; K07301 inner membrane protein id=14425893 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
sodium/calcium exchanger membrane region
13_1_40cm_2_scaffold_104_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16841..17974
DNA (1134bp) protein (378aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBE3_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25101.1}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="
13_1_40cm_2_scaffold_104_19
Thermoanaerobacter kivui, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18239..19150
DNA (912bp) protein (304aa)
Magnesium and cobalt transport protein CorA n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RK58_METP4
corA; magnesium Mg(2+) and cobalt Co(2+) transport protein CorA
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=2325 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="T
13_1_40cm_2_scaffold_104_20
unknown

Not on your lists

comp(19544..20062)
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_21
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

20358..21161
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BA64_9ARCH
Uncharacterized protein Tax=RBG_16_Thaumarchaeota_49_8_curated
hypothetical protein
13_1_40cm_2_scaffold_104_22
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(21559..22623)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003745435
oxidoreductase domain-containing protein Tax=RBG_16_Thaumarchaeota_49_8_curated
oxidoreductase domain-containing protein
13_1_40cm_2_scaffold_104_23
unknown

Not on your lists

comp(22906..23136)
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_24
unknown

Not on your lists

comp(23286..23537)
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_25
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

24118..24663
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-N13 RepID=UPI000366A893
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16813.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera v
13_1_40cm_2_scaffold_104_26
unknown

Not on your lists

24761..24889
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_27
unknown

Not on your lists

comp(25162..25734)
DNA (573bp) protein (191aa)

This feature has no annotations

13_1_40cm_2_scaffold_104_28

Not on your lists

25790..27007
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00035F9E9B
Marine sediment metagenome DNA, contig: S01H1_L04025 {ECO:0000313|EMBL:GAF79609.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
13_1_40cm_2_scaffold_104_29
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(27196..27867)
DNA (672bp) protein (224aa)
cell surface protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B612A2
PKD domain-containing protein Tax=RBG_16_Euryarchaeota_68_13_curated
fibronectin type III domain-containing protein
Displaying 30 items

View Taxonomy