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13_1_40cm_2_scaffold_1071

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1071_1
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..260)
DNA (258bp) protein (86aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirilla
tRNA-specific adenosine-34 deaminase (EC:3.5.4.-)
Zinc-binding CMP/dCMP deaminase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBR6_9PROT
13_1_40cm_2_scaffold_1071_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(253..1695)
DNA (1443bp) protein (481aa)
Chaperone ClpB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8H4_GEMAT
clpB; chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent chaperone ClpB
13_1_40cm_2_scaffold_1071_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(1914..2789)
DNA (876bp) protein (292aa)
Chaperone ClpB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8H4_GEMAT
clpB; chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent chaperone ClpB
13_1_40cm_2_scaffold_1071_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(2882..3316)
DNA (435bp) protein (145aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_2_scaffold_1071_5
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3407..5335)
DNA (1929bp) protein (643aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39Q47_GEOMG
selenocysteine-specific protein translation elongation factor; K03833 selenocysteine-specific elongation factor Tax=CG_Syntroph_01
selB; selenocysteine-specific translation elongation factor
13_1_40cm_2_scaffold_1071_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(5284..6087)
DNA (804bp) protein (268aa)
DNA repair protein RecO n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8H2_GEMAT
DNA repair protein recO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;"
13_1_40cm_2_scaffold_1071_7
unknown

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comp(6090..7136)
DNA (1047bp) protein (349aa)

This feature has no annotations

13_1_40cm_2_scaffold_1071_8
R_WOR_2_50_17, WOR-2, Bacteria

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comp(7133..7816)
DNA (684bp) protein (228aa)
ATP-binding protein; K06927 Tax=RIFCSPHIGHO2_02_FULL_WOR_2_50_17_curated
ATP-binding protein; K06927 id=14424885 bin=bin1_lowGC species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
protein of unknown function DUF71 ATP-binding region
13_1_40cm_2_scaffold_1071_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(7844..9805)
DNA (1962bp) protein (654aa)
Cobalamin uptake ligand-gated TonB-dependent outer membrane channel n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A7D0_PELCD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AHG90671.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_1071_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(9819..10616)
DNA (798bp) protein (266aa)
btuC; putative vitamin B12 transport protein BtuD; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative vitamin B12 transport protein BtuD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5M7_GEMAT
btuC; putative vitamin B12 transport protein BtuD
13_1_40cm_2_scaffold_1071_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(10601..11542)
DNA (942bp) protein (314aa)
Putative vitamin B12 transport protein BtuC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5M8_GEMAT
transmembrane ABC transporter protein,permease; K02015 iron complex transport system permease protein Tax=GWC2_Gemmatimonadetes_71_10_curated
btuD; putative vitamin B12 transport protein BtuC
13_1_40cm_2_scaffold_1071_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(11539..12429)
DNA (891bp) protein (297aa)
ABC transporter substrate binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G9_GEMAT
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_1071_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(12647..13483)
DNA (837bp) protein (279aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_2_scaffold_1071_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(13575..14105)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B67E33
hypothetical protein; K08999 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein of unknown function DUF151
13_1_40cm_2_scaffold_1071_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(14087..15430)
DNA (1344bp) protein (448aa)
Adenosylhomocysteinase n=1 Tax=delta proteobacterium NaphS2 RepID=D8FF04_9DELT
adenosylhomocysteinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
adenosylhomocysteinase
13_1_40cm_2_scaffold_1071_16
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15427..16653)
DNA (1227bp) protein (409aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, E
S-adenosylmethionine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G6_GEMAT
13_1_40cm_2_scaffold_1071_17
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16673..18475)
DNA (1803bp) protein (601aa)
ptsI; phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G5_GEMAT
13_1_40cm_2_scaffold_1071_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(18472..18813)
DNA (342bp) protein (114aa)
ptsH; phosphocarrier protein HPr; K11189 phosphocarrier protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ptsH; phosphocarrier protein HPr; K11189 phosphocarrier protein id=7200581 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
ptsH; phosphocarrier protein HPr
13_1_40cm_2_scaffold_1071_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(18804..19571)
DNA (768bp) protein (256aa)
Phosphotransferase system enzyme IID component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G3_GEMAT
phosphotransferase system enzyme IID component; K02796 PTS system, mannose-specific IID component Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PTS system mannose/fructose/sorbose family IID component
13_1_40cm_2_scaffold_1071_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(19568..20245)
DNA (678bp) protein (226aa)
Putative phosphotransferase system enzyme IIC component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G2_GEMAT
phosphotransferase system PTS sorbose-specific IIC subunit
Phosphotransferase system PTS sorbose-specific IIC subunit {ECO:0000313|EMBL:AHG90661.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_1071_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(20242..20715)
DNA (474bp) protein (158aa)
Phosphotransferase system enzyme IIB component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G1_GEMAT
phosphotransferase system enzyme IIB component Tax=GWC2_Gemmatimonadetes_71_10_curated
PTS system sorbose subfamily IIB component
13_1_40cm_2_scaffold_1071_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20712..21092)
DNA (381bp) protein (127aa)
phosphotransferase system enzyme IIA component; K02744 PTS system, N-acetylgalactosamine-specific IIA component [EC:2.7.1.69] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphotransferase system enzyme IIA component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G0_GEMAT
phosphotransferase system enzyme IIA component
13_1_40cm_2_scaffold_1071_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21085..22053)
DNA (969bp) protein (323aa)
hprK; HPr kinase/phosphorylase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
HPr kinase/phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F9_GEMAT
hprK; HPr kinase/phosphorylase
13_1_40cm_2_scaffold_1071_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22050..22373)
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_2_scaffold_1071_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22377..23492)
DNA (1116bp) protein (372aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F8_GEMAT
glycosyl transferase group 1
13_1_40cm_2_scaffold_1071_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(23489..23902)
DNA (414bp) protein (138aa)
N utilization substance protein B homolog n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=NUSB_SOLUE
nusB; antitermination protein NusB; K03625 N utilization substance protein B Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
N utilization substance protein B-like protein
13_1_40cm_2_scaffold_1071_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(23883..24323)
DNA (441bp) protein (147aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=GWC2_Gemmatimonadetes_71_10_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Synergistetes bacterium JGI 0000079-D21 RepID=UPI0003B4437F
13_1_40cm_2_scaffold_1071_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(24371..24493)
DNA (123bp) protein (41aa)
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (EC:3.5.4.25 4.1.99.12); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
Riboflavin biosynthesis protein RibBA n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HDY4_ANADF
3,4-dihydroxy-2-butanone 4-phosphate synthase
Displaying 28 items

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