ggKbase home page

13_1_40cm_2_scaffold_1218

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1218_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..1782)
DNA (1782bp) protein (594aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein id=3162221 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_1218_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1787..2710
DNA (924bp) protein (308aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2995738 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NHL repeat family protein
13_1_40cm_2_scaffold_1218_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2707..3273
DNA (567bp) protein (189aa)
Mll1439 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98KK1_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX26363.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pluri
hypothetical protein
13_1_40cm_2_scaffold_1218_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3270..3545
DNA (276bp) protein (92aa)
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAX6_THECD
transcriptional coactivator/pterin dehydratase
13_1_40cm_2_scaffold_1218_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3559..4029
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBI8_9BRAD
thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thioesterase superfamily protein
13_1_40cm_2_scaffold_1218_6
unknown

Not on your lists

4026..4331
DNA (306bp) protein (102aa)

This feature has no annotations

13_1_40cm_2_scaffold_1218_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4328..4975)
DNA (648bp) protein (216aa)
Soluble lytic murein transglycosylase-like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Soluble lytic murein transglycosylase-like protein id=4894272 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas ruminantium genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1218_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5190..5429)
DNA (240bp) protein (80aa)
cytoplasmic protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4894273 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytoplasmic protein
13_1_40cm_2_scaffold_1218_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5485..6321
DNA (837bp) protein (279aa)
oxidoreductase id=14626050 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
oxidoreductase Tax=CSP1_6_Rokubacteria
putative oxidoreductase
13_1_40cm_2_scaffold_1218_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6328..7932
DNA (1605bp) protein (535aa)
family 3 adenylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Family 3 adenylate cyclase id=4845186 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 3 adenylate cyclase
13_1_40cm_2_scaffold_1218_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7935..8882
DNA (948bp) protein (316aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626058 bin=bin7_NC10_sister species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_40cm_2_scaffold_1218_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8915..9766
DNA (852bp) protein (284aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alpha/beta hydrolase fold protein id=3474252 bin=GWA2_Methylomirabilis_73_35 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system
13_1_40cm_2_scaffold_1218_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9778..10095
DNA (318bp) protein (106aa)
Rhodanese domain protein id=3474250 bin=GWA2_Methylomirabilis_73_35 species=Kingella denitrificans genus=Kingella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rhodanese-like protein Tax=GWA2_Rokubacteria_73_35_curated
sulfurtransferase
13_1_40cm_2_scaffold_1218_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10095..10862
DNA (768bp) protein (256aa)
echA8_3; enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA dehydratase, EchA8_3 id=3474245 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1218_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10859..11611
DNA (753bp) protein (251aa)
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative hydrolase (HAD superfamily) id=3474242 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase
13_1_40cm_2_scaffold_1218_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11637..12017)
DNA (381bp) protein (127aa)
hypothetical protein id=3474240 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_1218_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12242..12766
DNA (525bp) protein (175aa)
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase id=3474236 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1218_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12759..13076
DNA (318bp) protein (106aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4741179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1218_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13131..13988
DNA (858bp) protein (286aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] id=14626066 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
3-hydroxybutyryl-CoA dehydrogenase
13_1_40cm_2_scaffold_1218_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14004..14870)
DNA (867bp) protein (289aa)
ABC-3 protein; K02075 zinc/manganese transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC-3 protein; K02075 zinc/manganese transport system permease protein id=14627589 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
ABC-3 protein
13_1_40cm_2_scaffold_1218_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(15046..15372)
DNA (327bp) protein (109aa)
acetamidase/formamidase Tax=CSP1_6_Rokubacteria
acetamidase/formamidase id=14627591 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative amidase
13_1_40cm_2_scaffold_1218_22
unknown

Not on your lists

15441..15818
DNA (378bp) protein (126aa)

This feature has no annotations

Displaying 22 items

View Taxonomy