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13_1_40cm_2_scaffold_1253

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1253_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2..379
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Q9_GEMAT
MJ0042 family finger-like protein
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_2_scaffold_1253_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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500..1498
DNA (999bp) protein (333aa)
Protein chain release factor B n=1 Tax=uncultured bacterium W5-51b RepID=H9BX62_9BACT
prfB; peptide chain release factor 2; K02836 peptide chain release factor 2 Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptide chain release factor 2
13_1_40cm_2_scaffold_1253_3

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1498..2979
DNA (1482bp) protein (494aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=uncultured bacterium W5-51b RepID=H9BX61_9BACT
13_1_40cm_2_scaffold_1253_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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2979..4310
DNA (1332bp) protein (444aa)
ABC-type transport system protein n=1 Tax=uncultured bacterium W5-51b RepID=H9BX60_9BACT
lolC; lipoprotein releasing system transmembrane protein LolC; K09808 lipoprotein-releasing system permease protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
lolC; lipoprotein releasing system transmembrane protein LolC
13_1_40cm_2_scaffold_1253_5

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4307..4927
DNA (621bp) protein (207aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=1130999 species="Bacteria; environmental samples.;" source
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=uncultured bacterium W5-51b RepID=H9BX59_9BACT
ABC transporter related protein
13_1_40cm_2_scaffold_1253_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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4950..5462
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium W5-51b RepID=H9BX58_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_2_scaffold_1253_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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5462..6532
DNA (1071bp) protein (357aa)
hypothetical protein; K00936 [EC:2.7.3.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATP:guanido phosphotransferase n=1 Tax=uncultured bacterium W5-51b RepID=H9BX57_9BACT
hypothetical protein
13_1_40cm_2_scaffold_1253_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6559..9039
DNA (2481bp) protein (827aa)
ATP-dependent Clp protease ATP-binding subunit ClpC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R6_GEMAT rbh
clpC; ATP-dependent Clp protease ATP-binding subunit ClpC; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATPase AAA-2 domain protein
13_1_40cm_2_scaffold_1253_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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9036..11354
DNA (2319bp) protein (773aa)
Bacterial surface antigen (D15) family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R7_GEMAT
surface antigen; K07277 outer membrane protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
outer membrane protein assembly complex, YaeT protein
13_1_40cm_2_scaffold_1253_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11468..12037
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=uncultured Gemmatimonadales bacterium HF0500_22O06 RepID=E7C5E1_9BACT
outer membrane chaperone skp (omph); K06142 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
outer membrane chaperone Skp (OmpH)
13_1_40cm_2_scaffold_1253_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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12060..13151
DNA (1092bp) protein (364aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R9_GEMAT
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
13_1_40cm_2_scaffold_1253_12
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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13252..14385
DNA (1134bp) protein (378aa)
lpxC_fabZ; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase (EC:3.5.1.- 4.2.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00041386};; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064862};; 3-hydroxyacyl-[
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S0_GEMAT
13_1_40cm_2_scaffold_1253_13
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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14382..15149
DNA (768bp) protein (256aa)
lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=379066 species="Bacteria; Gemmatimonadetes;
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S1_GEMAT
13_1_40cm_2_scaffold_1253_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15146..16132
DNA (987bp) protein (329aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S2_GEMAT
oxidoreductase domain protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AHG90760.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_1253_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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16129..17277
DNA (1149bp) protein (383aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] Tax=GWC2_Gemmatimonadetes_71_10_curated
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S3_GEMAT
13_1_40cm_2_scaffold_1253_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17274..17900
DNA (627bp) protein (209aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Bacteria RepID=E7C459_9BACT
hypothetical protein; K09778 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF374
13_1_40cm_2_scaffold_1253_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17897..18928
DNA (1032bp) protein (344aa)
lpxK; tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetraacyldisaccharide 4'-kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S5_GEMAT
Tetraacyldisaccharide 4'-kinase
13_1_40cm_2_scaffold_1253_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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18925..20214
DNA (1290bp) protein (430aa)
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Glutamate dehydrogenase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X074_ACISM
Glu/Leu/Phe/Val dehydrogenase
13_1_40cm_2_scaffold_1253_19
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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20214..20636
DNA (423bp) protein (141aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000255|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000255|HAMAP
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=RLMH_ANADF
hypothetical protein
13_1_40cm_2_scaffold_1253_20
BJP_IG2157_CP_49_12, Bacteria

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20749..21189
DNA (441bp) protein (147aa)
AMMECR1 domain-containing protein; K06990 id=7201095 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
AMMECR1-domain-containing protein
Tax=BJP_IG2157_CP_49_12
13_1_40cm_2_scaffold_1253_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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21186..21923
DNA (738bp) protein (246aa)
Methyltransferase type 11 n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQ79_9BACT
methyltransferase Tax=GWC2_Gemmatimonadetes_71_10_curated
methyltransferase
13_1_40cm_2_scaffold_1253_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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21920..23344
DNA (1425bp) protein (475aa)
UPF0747 protein n=1 Tax=uncultured Gemmatimonadales bacterium HF0500_22O06 RepID=E7C5E8_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function UCP012535
13_1_40cm_2_scaffold_1253_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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23355..23627
DNA (273bp) protein (91aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_2_scaffold_1253_24
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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23624..25336
DNA (1713bp) protein (571aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S9_GEMAT
integral membrane protein MviN; K03980 virulence factor Tax=RBG_13_Deltaproteobacteria_52_11b_curated
hypothetical protein
13_1_40cm_2_scaffold_1253_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

25639..26892
DNA (1254bp) protein (418aa)
UvrABC system protein C n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=UVRC_GEMAT
uvrC; UvrABC system protein C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
UvrABC system protein C
13_1_40cm_2_scaffold_1253_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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26889..27146
DNA (258bp) protein (86aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
threonine synthase
Displaying 26 items

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