ggKbase home page

13_1_40cm_2_scaffold_126

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_126_1
unknown

Not on your lists

comp(3..1913)
DNA (1911bp) protein (637aa)

This feature has no annotations

13_1_40cm_2_scaffold_126_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(1969..4665)
DNA (2697bp) protein (899aa)
Extracellular solute-binding protein family 5 n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EH58_AMICL
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_13_Bathyarchaeota_38_9_curated
family 5 extracellular solute-binding protein
13_1_40cm_2_scaffold_126_3
unknown

Not on your lists

5029..5355
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_2_scaffold_126_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

5547..6593
DNA (1047bp) protein (349aa)
Aminotransferase class V n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QNH1_VULDI
aminotransferase Tax=RBG_16_Archaea_50_20_curated
class V aminotransferase
13_1_40cm_2_scaffold_126_5
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

Not on your lists

6597..7193
DNA (597bp) protein (199aa)
guaA-2; GMP synthase subunit A (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RBG_13_WOR_3_43_14_curated
GMP synthase subunit A (EC:6.3.5.2)
Glutamine amidotransferase class-I n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S0B1_9FIRM
13_1_40cm_2_scaffold_126_6

Not on your lists

comp(7208..8089)
DNA (882bp) protein (294aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:00
ctaB2; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D4P5_9ARCH
13_1_40cm_2_scaffold_126_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8240..8920
DNA (681bp) protein (227aa)
Rhomboid family protein n=1 Tax=Methanosaeta harundinacea (strain 6Ac) PF8_METH6">RepID=G7WPF8_METH6
rhomboid family protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
13_1_40cm_2_scaffold_126_8

Not on your lists

comp(8894..9445)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-A16 RepID=UPI0003655A1B
Marine sediment metagenome DNA, contig: S06H3_L07525 {ECO:0000313|EMBL:GAI13412.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
13_1_40cm_2_scaffold_126_9
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

9611..10318
DNA (708bp) protein (236aa)
Macrolide export ATP-binding/permease protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LIV4_THEBM
ABC transporter
ABC transporter {ECO:0000313|EMBL:AIF68441.1}; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus DY20341.;"
13_1_40cm_2_scaffold_126_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

10339..12894
DNA (2556bp) protein (852aa)
Hypothetical membrane protein id=2108305 bin=GWE2_Firmicute_51_13 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
hypothetical protein; K02004 putative ABC transport system permease protein Tax=GWF2_Firmicutes_51_9_curated
hypothetical protein
13_1_40cm_2_scaffold_126_11
unknown

Not on your lists

12982..13530
DNA (549bp) protein (183aa)

This feature has no annotations

13_1_40cm_2_scaffold_126_12

Not on your lists

13620..14201
DNA (582bp) protein (194aa)
purH; bifunctional purine biosynthesis protein (EC:2.1.2.3 3.5.4.10)
Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YHF6_9ZZZZ
Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase {ECO:0000313|EMBL:EQD31282.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ec
13_1_40cm_2_scaffold_126_13
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

14270..15283
DNA (1014bp) protein (338aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] T
purH; bifunctional purine biosynthesis protein PurH (EC:2.1.2.3 3.5.4.10)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000366C3E3
13_1_40cm_2_scaffold_126_14
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16279..17172
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NVF8_GRAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEU36539.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC B
13_1_40cm_2_scaffold_126_15
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

17205..17975
DNA (771bp) protein (257aa)
Marine sediment metagenome DNA, contig: S06H3_C02025 Tax=RBG_16_Chloroflexi_68_14_curated
13_1_40cm_2_scaffold_126_16
unknown

Not on your lists

17994..18473
DNA (480bp) protein (160aa)

This feature has no annotations

13_1_40cm_2_scaffold_126_17
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(18496..19530)
DNA (1035bp) protein (345aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1) Tax=RBG_16_Thaumarchaeota_49_8_curated
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CVM9_9ARCH
13_1_40cm_2_scaffold_126_18
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(19548..20414)
DNA (867bp) protein (289aa)
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6) Tax=RBG_16_Thaumarchaeota_49_8_curated
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI0003826EBE
13_1_40cm_2_scaffold_126_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(20415..20825)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000364C5DE
phosphoribosylaminoimidazole carboxylase catalytic subunit Tax=RBG_16_Euryarchaeota_68_12_curated
phosphoribosylaminoimidazole carboxylase catalytic subunit
13_1_40cm_2_scaffold_126_20
Acetohalobium arabaticum, Acetohalobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20846..21442)
DNA (597bp) protein (199aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=574087 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobactero
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QVK5_ACEAZ
5-formyltetrahydrofolate cyclo-ligase
13_1_40cm_2_scaffold_126_21
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(21439..22284)
DNA (846bp) protein (282aa)
Bifunctional protein FolD n=1 Tax=Acetonema longum DSM 6540 RepID=F7NGT8_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 654
methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
13_1_40cm_2_scaffold_126_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(22296..22919)
DNA (624bp) protein (208aa)
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase {ECO:0000313|EMBL:AFU57385.1}; EC=2.1.2.2 {ECO:0000313|EMBL:AFU57385.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales
Phosphoribosylglycinamide formyltransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICM7_NITGG
13_1_40cm_2_scaffold_126_23

Not on your lists

comp(22924..24282)
DNA (1359bp) protein (453aa)
phosphoribosylamine/glycine ligase (EC:6.3.4.13)
Phosphoribosylamine/glycine ligase n=1 Tax=uncultured archaeon W5-61a RepID=H9BX98_9ARCH
Phosphoribosylamine/glycine ligase {ECO:0000313|EMBL:AFD03420.1}; TaxID=1131008 species="Archaea; environmental samples.;" source="uncultured archaeon W5-61a.;"
Displaying 23 items

View Taxonomy