ggKbase home page

13_1_40cm_2_scaffold_1353

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1353_1
unknown

Not on your lists

comp(2..115)
DNA (114bp) protein (38aa)

This feature has no annotations

13_1_40cm_2_scaffold_1353_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

406..1428
DNA (1023bp) protein (341aa)
Transposase IS116/IS110/IS902 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IK49_KORVE
transposase IS116/IS110/IS902
Transposase IS116/IS110/IS902 {ECO:0000313|EMBL:ABF42751.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis
13_1_40cm_2_scaffold_1353_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

2064..2468
DNA (405bp) protein (135aa)
PadR family transcripitonal regulator n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037111C5
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:ABJ84211.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Sol
13_1_40cm_2_scaffold_1353_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2465..5167
DNA (2703bp) protein (901aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PE9_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_1353_5
unknown

Not on your lists

comp(5673..6179)
DNA (507bp) protein (169aa)

This feature has no annotations

13_1_40cm_2_scaffold_1353_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(6749..9463)
DNA (2715bp) protein (905aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000378DB5F
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
permease
13_1_40cm_2_scaffold_1353_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(9484..9849)
DNA (366bp) protein (122aa)
Transcriptional regulator, PadR family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XF4_SOLUE
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:ABJ85661.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Sol
13_1_40cm_2_scaffold_1353_8
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10464..10805
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q056_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EIG53162.1}; Flags: Precursor;; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;"
hypothetical protein
13_1_40cm_2_scaffold_1353_9
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10978..11385
DNA (408bp) protein (136aa)
Transposase n=1 Tax=Acidovorax sp. CF316 RepID=J0KL98_9BURK
transposase IS200-like; K07491 putative transposase Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
transposase IS200-like
13_1_40cm_2_scaffold_1353_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(11606..12484)
DNA (879bp) protein (293aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AFV0_9SPHN
metallo-beta-lactamase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
metallo-beta-lactamase
13_1_40cm_2_scaffold_1353_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(12593..15664)
DNA (3072bp) protein (1024aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC10-10 RepID=Q4JIP3_9BACT
TonB-dependent receptor Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
TonB-dependent receptor
13_1_40cm_2_scaffold_1353_12
unknown

Not on your lists

15842..16033
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_2_scaffold_1353_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

16201..16716
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRL6_9GAMM
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
toxin-antitoxin system, HicB family
13_1_40cm_2_scaffold_1353_14
unknown

Not on your lists

comp(17730..18338)
DNA (609bp) protein (203aa)

This feature has no annotations

13_1_40cm_2_scaffold_1353_15
Chryseobacterium vrystaatense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18621..19403
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Oceanobacillus kimchii RepID=UPI00034A1A4E
DNA alkylation repair protein {ECO:0000313|EMBL:KFF27167.1}; TaxID=307480 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobact
hypothetical protein
13_1_40cm_2_scaffold_1353_16
unknown

Not on your lists

19617..20075
DNA (459bp) protein (153aa)

This feature has no annotations

13_1_40cm_2_scaffold_1353_17
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(20126..21928)
DNA (1803bp) protein (601aa)
Putative uncharacterized protein n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=A1S5G8_SHEAM
hypothetical protein Tax=RBG_13_Chloroflexi_48_10_curated
hypothetical protein
13_1_40cm_2_scaffold_1353_18
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(22080..22799)
DNA (720bp) protein (240aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IT25_KORVE
two component LuxR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
LuxR family transcriptional regulator
13_1_40cm_2_scaffold_1353_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(22900..23421)
DNA (522bp) protein (174aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUD6_KORVE
two component transcriptional regulator; K07667 two-component system, OmpR family, KDP operon response regulator KdpE Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
two component transcriptional regulator
13_1_40cm_2_scaffold_1353_20
unknown

Not on your lists

comp(23530..23601)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 20 items

View Taxonomy