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13_1_40cm_2_scaffold_12807

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_12807_1
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247..1416
DNA (1170bp) protein (390aa)
putative oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=GWD2_Deltaproteobacteria_55_8_curated
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen III oxidase, anaerobic id=2136369 bin=GWD2_Deltaproteobacteria_55_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
13_1_40cm_2_scaffold_12807_2
unknown

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1453..1902
DNA (450bp) protein (150aa)

This feature has no annotations

13_1_40cm_2_scaffold_12807_3
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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1909..2382
DNA (474bp) protein (158aa)
Conserved uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q090P9_STIAD
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:ADO74630.1}; Uncharacterized protein {ECO:0000313|EMBL:EAU66204.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcale
13_1_40cm_2_scaffold_12807_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2641..3576
DNA (936bp) protein (312aa)
amidohydrolase family protein (EC:3.5.-.-); K14333 2,3-dihydroxybenzoate decarboxylase [EC:4.1.1.46] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
o-pyrocatechuate decarboxylase (EC:4.1.1.46)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase n=1 Tax=Bacillus sp. 17376 RepID=V6T3M2_9BACI
13_1_40cm_2_scaffold_12807_5

Not on your lists

comp(3539..4147)
DNA (609bp) protein (203aa)
Cysteine dioxygenase type I n=1 Tax=uncultured bacterium RepID=C6L1E7_9BACT
hypothetical protein
Cysteine dioxygenase type I {ECO:0000313|EMBL:BAH90566.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_40cm_2_scaffold_12807_6
unknown

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comp(4210..4452)
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_40cm_2_scaffold_12807_7
RLO_PLX_64_10, Bacteria

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comp(4500..5543)
DNA (1044bp) protein (348aa)
nitrile hydratase subunit alpha; K01721 nitrile hydratase [EC:4.2.1.84] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
nitrile hydratase (EC:4.2.1.84)
Nitrile hydratase n=1 Tax=Pseudanabaena sp. PCC 7367 RepID=K9SJ64_9CYAN
13_1_40cm_2_scaffold_12807_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5560..6432)
DNA (873bp) protein (291aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Putative uncharacterized protein id=4734852 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_12807_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6544..6858)
DNA (315bp) protein (105aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Adenosylhomocysteinase id=1759816 bin=GWD2_Deltaproteobacteria_55_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
adenosylhomocysteinase
13_1_40cm_2_scaffold_12807_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6842..7750)
DNA (909bp) protein (303aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Adenosylhomocysteinase id=1759816 bin=GWD2_Deltaproteobacteria_55_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
S-adenosyl-L-homocysteine hydrolase
13_1_40cm_2_scaffold_12807_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7782..8960)
DNA (1179bp) protein (393aa)
metK; S-adenosylmethionine synthetase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
S-adenosylmethionine synthase id=1759815 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
metK-1; S-adenosylmethionine synthetase
13_1_40cm_2_scaffold_12807_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9112..9387)
DNA (276bp) protein (92aa)
Phosphotransferase system, phosphocarrier protein HPr id=1759814 bin=GWD2_Deltaproteobacteria_55_8 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
HPrNtr; K11189 phosphocarrier protein Tax=GWD2_Deltaproteobacteria_55_8_curated
phosphotransferase system, phosphocarrier protein HPr
13_1_40cm_2_scaffold_12807_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9392..10258)
DNA (867bp) protein (289aa)
hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
UPF0042 nucleotide-binding protein COCOR_07137 id=1759813 bin=GWD2_Deltaproteobacteria_55_8 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
hypothetical protein
13_1_40cm_2_scaffold_12807_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10330..10791)
DNA (462bp) protein (154aa)
PTS system transporter subunit IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Putative PTS IIA-like nitrogen-regulatory protein PtsN id=1759812 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
13_1_40cm_2_scaffold_12807_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10788..11099)
DNA (312bp) protein (104aa)
Ribosomal subunit interface protein id=1759810 bin=GWD2_Deltaproteobacteria_55_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
pseudouridine synthase
13_1_40cm_2_scaffold_12807_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11119..11487)
DNA (369bp) protein (123aa)
rpoN; RNA polymerase, sigma 54/sigma 60 factor; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
RNA polymerase sigma-54 factor id=1759808 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RNA polymerase sigma 54 subunit RpoN
13_1_40cm_2_scaffold_12807_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11504..12559)
DNA (1056bp) protein (352aa)
rpoN; RNA polymerase, sigma 54/sigma 60 factor; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
RNA polymerase sigma-54 factor id=1759808 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpoN; RNA polymerase sigma-54 factor RpoN
13_1_40cm_2_scaffold_12807_18
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12562..13284)
DNA (723bp) protein (241aa)
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=GWD2_Deltaproteobacteria_55_8_curated
ABC transporter ATP-binding protein id=1759806 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_12807_19
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13281..13859)
DNA (579bp) protein (193aa)
Lipopolysaccharide transport periplasmic protein LptA id=1759804 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
OstA-like protein; K09774 lipopolysaccharide export system protein LptA Tax=GWD2_Deltaproteobacteria_55_8_curated
lptA; lipopolysaccharide ABC transporter periplasmic protein LptA
13_1_40cm_2_scaffold_12807_20
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13856..14095)
DNA (240bp) protein (80aa)
id=1759803 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
id=1759803 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_2_scaffold_12807_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14107..14415)
DNA (309bp) protein (103aa)
id=1759803 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
id=1759803 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_2_scaffold_12807_22
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14512..15051)
DNA (540bp) protein (180aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (EC:3.1.3.45); K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=RIFCSPLOWO2_12_FULL
3-deoxy-manno-octulosonate-8-phosphatase (EC:3.1.3.45)
3-deoxy-manno-octulosonate-8-phosphatase id=1759801 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_2_scaffold_12807_23
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15060..16040)
DNA (981bp) protein (327aa)
KpsF/GutQ family protein (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
KpsF/GutQ family protein id=1759798 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
D-arabinose 5-phosphate isomerase
13_1_40cm_2_scaffold_12807_24
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16046..16873)
DNA (828bp) protein (276aa)
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=GWD2_Deltaproteobacteria_55_8_curated
2-dehydro-3-deoxyphosphooctonate aldolase id=1759796 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
2-dehydro-3-deoxyphosphooctonate aldolase
13_1_40cm_2_scaffold_12807_25
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16893..17117)
DNA (225bp) protein (75aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase id=1759794 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Displaying 25 items

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