ggKbase home page

13_1_40cm_2_scaffold_1468

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1468_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..306)
DNA (306bp) protein (102aa)
nuoB; NADH-quinone oxidoreductase chain B (EC:1.6.99.5); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
NADH-quinone oxidoreductase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Z3_GEMAT
NAD(P)H-quinone oxidoreductase subunit K
13_1_40cm_2_scaffold_1468_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(311..628)
DNA (318bp) protein (106aa)
nuoA-1; NADH dehydrogenase I subunit A; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
NADH-quinone oxidoreductase subunit A n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZL7_GEODF
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
13_1_40cm_2_scaffold_1468_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

750..1277
DNA (528bp) protein (176aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=GWC2_Gemmatimonadetes_71_10_curated
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=DCD_GEMAT
13_1_40cm_2_scaffold_1468_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1286..3103)
DNA (1818bp) protein (606aa)
Membrane protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQT5_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_2_scaffold_1468_5
unknown

Not on your lists

comp(3100..3516)
DNA (417bp) protein (139aa)

This feature has no annotations

13_1_40cm_2_scaffold_1468_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3533..5188)
DNA (1656bp) protein (552aa)
Glutamate carboxypeptidase II n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4P5_GEMAT
peptidase M28
Peptidase M28 {ECO:0000313|EMBL:AHG88926.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_1468_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5579..8080)
DNA (2502bp) protein (834aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Glutamyl-and glutaminyl-tRNA synthetase id=4166726 bin=GWA2_Ignavibacteria_55_11 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
13_1_40cm_2_scaffold_1468_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

8158..9618
DNA (1461bp) protein (487aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GBT4_CHLAD
GAF sensor hybrid histidine kinase Tax=GWC2_Gemmatimonadetes_71_10_curated
multi-sensor hybrid histidine kinase
13_1_40cm_2_scaffold_1468_9
unknown

Not on your lists

9619..9867
DNA (249bp) protein (83aa)

This feature has no annotations

13_1_40cm_2_scaffold_1468_10
unknown

Not on your lists

9940..11319
DNA (1380bp) protein (460aa)

This feature has no annotations

13_1_40cm_2_scaffold_1468_11
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(11552..12796)
DNA (1245bp) protein (415aa)
putative oxidoreductase; K03885 NADH dehydrogenase [EC:1.6.99.3] Tax=RBG_13_Chloroflexi_66_10_curated
Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain-containing protein id=4451068 bin=GWF2_Lentisphaerae_57_35 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
FAD-dependent pyridine nucleotide-disulfide oxidoreductase family protein
13_1_40cm_2_scaffold_1468_12

Not on your lists

comp(12775..13518)
DNA (744bp) protein (248aa)
Succinate dehydrogenase subunit B id=1250010 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Succinate dehydrogenase subunit B {ECO:0000313|EMBL:EQB62873.1}; TaxID=1379698 species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
fumarate reductase iron-sulfur subunit
13_1_40cm_2_scaffold_1468_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(13521..15329)
DNA (1809bp) protein (603aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] id=14430250 bin=bin3_NC10 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] Tax=CSP1_5_NC10
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1)
13_1_40cm_2_scaffold_1468_14
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(15329..16120)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000364220E
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
putative integral membrane protein
13_1_40cm_2_scaffold_1468_15
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(16117..17046)
DNA (930bp) protein (310aa)
mdh; malate dehydrogenase (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RBG_16_Acidobacteria_68_9_curated
Malate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A902_GEMAT
Malate dehydrogenase
13_1_40cm_2_scaffold_1468_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(17072..18091)
DNA (1020bp) protein (340aa)
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein id=14626248 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
moaA; molybdenum cofactor biosynthesis protein A
13_1_40cm_2_scaffold_1468_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18081..18518)
DNA (438bp) protein (146aa)
molybdopterin biosynthesis MoaE protein; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
molybdopterin (MPT) converting factor, subunit 2 n=1 Tax=Thermus islandicus RepID=UPI0003B77ECE
molybdopterin biosynthesis MoaE protein
13_1_40cm_2_scaffold_1468_18
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(18515..18766)
DNA (252bp) protein (84aa)
Molybdopterin synthase subunit MoaD / molybdopterin synthase subunit MoaE n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFU7_9BACT
moaD; molybdopterin converting factor, subunit 1; K03636 molybdopterin synthase sulfur carrier subunit Tax=RBG_16_Acidobacteria_68_9_curated
thiamine S protein
13_1_40cm_2_scaffold_1468_19
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18771..20570)
DNA (1800bp) protein (600aa)
peptidase M61 n=1 Tax=Pontibacter roseus RepID=UPI00036CB6C9
peptidase M61
Peptidase M61 {ECO:0000313|EMBL:AKD05793.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
13_1_40cm_2_scaffold_1468_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20688..21002)
DNA (315bp) protein (105aa)
DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A906_GEMAT
DNA-binding protein; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
histone family protein DNA-binding protein
13_1_40cm_2_scaffold_1468_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21069..22229)
DNA (1161bp) protein (387aa)
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A907_GEMAT
Displaying 21 items

View Taxonomy