ggKbase home page

13_1_40cm_2_scaffold_1483

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1483_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3..623)
-----------------
DNA (621bp)
protein (207aa)
geranylgeranyl reductase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
geranylgeranyl reductase id=12556201 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
geranylgeranyl reductase
13_1_40cm_2_scaffold_1483_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(716..1501)
-----------------
DNA (786bp)
protein (262aa)
Methyltransferase type 12 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFT4_CHIPD
Putative methyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
type 12 methyltransferase
13_1_40cm_2_scaffold_1483_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(1498..2112)
-----------------
DNA (615bp)
protein (205aa)
sugar transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
sugar transferase id=12556202 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sugar transferase
13_1_40cm_2_scaffold_1483_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2109..3266)
-----------------
DNA (1158bp)
protein (386aa)
Mannosyltransferase n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0K4S7_9EURY
O-antigen export system permease Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Glycosyltransferase
13_1_40cm_2_scaffold_1483_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3263..4258)
-----------------
DNA (996bp)
protein (332aa)
GDP-L-fucose synthase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0IJX1_THETR
nucleoside-diphosphate-sugar epimerase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nucleoside-diphosphate-sugar epimerase
13_1_40cm_2_scaffold_1483_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(4240..5451)
-----------------
DNA (1212bp)
protein (404aa)
group 1 glycosyl transferase (EC:2.4.1.-) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Glycosyl transferase group 1 n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HLK3_CYAP4
group 1 glycosyl transferase
13_1_40cm_2_scaffold_1483_7
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5448..6374)
-----------------
DNA (927bp)
protein (309aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxI
GDP-L-fucose synthase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0IJX1_THETR
nucleoside-diphosphate-sugar epimerase
13_1_40cm_2_scaffold_1483_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6498..7706)
-----------------
DNA (1209bp)
protein (403aa)
glycosyl transferase group 1 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4D7D
glycosyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glycosyltransferase
13_1_40cm_2_scaffold_1483_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7706..8596)
-----------------
DNA (891bp)
protein (297aa)
Putative methyltransferase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5H3_SPHJU
FkbM family methyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
putative methyltransferase
13_1_40cm_2_scaffold_1483_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8596..9510)
-----------------
DNA (915bp)
protein (305aa)
Putative glycosyltransferase n=2 Tax=Singulisphaera acidiphila RepID=L0DIB1_SINAD
glycosyl transferase family 2 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glycosyltransferase
13_1_40cm_2_scaffold_1483_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9507..10634)
-----------------
DNA (1128bp)
protein (376aa)
hypothetical protein n=1 Tax=Anabaena sp. PCC 7108 RepID=UPI00034D9E45
pimB1; group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
pimB1; group 1 glycosyl transferase
13_1_40cm_2_scaffold_1483_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10645..11574)
-----------------
DNA (930bp)
protein (310aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00036C8DD3
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
family 2 glycosyl transferase
13_1_40cm_2_scaffold_1483_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11555..12730)
-----------------
DNA (1176bp)
protein (392aa)
Glycosyl transferase, group 1 family protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DDH0_MYXXD
group 1 family glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 family glycosyl transferase
13_1_40cm_2_scaffold_1483_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(12730..13896)
-----------------
DNA (1167bp)
protein (389aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U3N4_MYXSD rbh
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_1483_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(13893..15422)
-----------------
DNA (1530bp)
protein (510aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Polysaccharide biosynthesis protein id=2211000 bin=GWB2_Proteobacteria_55_19 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
13_1_40cm_2_scaffold_1483_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(15419..16387)
-----------------
DNA (969bp)
protein (323aa)
methyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Methionine biosynthesis protein MetW-like protein id=2900978 bin=GWA2__Bacteriovorax-rel_49_15 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
type 12 methyltransferase
13_1_40cm_2_scaffold_1483_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(16384..17541)
-----------------
DNA (1158bp)
protein (386aa)
group 1 family glycosyl transferase (EC:2.4.1.-)
glycosyl transferase family 1 n=1 Tax=Myxococcus xanthus RepID=UPI0002D7F0AB rbh
group 1 family glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_1483_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(17538..18974)
-----------------
DNA (1437bp)
protein (479aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HLI8_CYAP4
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_1483_19
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18955..20748)
-----------------
DNA (1794bp)
protein (598aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI000368517A rbh
asnB; asparagine synthase
Asparagine synthase {ECO:0000313|EMBL:AGW15233.1}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio
13_1_40cm_2_scaffold_1483_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(20913..22115)
-----------------
DNA (1203bp)
protein (401aa)
Glycosyl transferase group 1 n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PIY7_9CYAN
group 1 glycosyl transferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
group 1 glycosyl transferase
13_1_40cm_2_scaffold_1483_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(22112..23050)
-----------------
DNA (939bp)
protein (313aa)
Methyltransferase FkbM family n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QYF0_ISOPI
FkbM family methyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
FkbM family methyltransferase
13_1_40cm_2_scaffold_1483_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(23043..23729)
-----------------
DNA (687bp)
protein (229aa)
hypothetical protein n=1 Tax=Chlorogloeopsis fritschii RepID=UPI0002E5A71E
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_1483_23
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(23726..24853)
-----------------
DNA (1128bp)
protein (376aa)
Group 1 family glycosyl transferase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CJC2_MYXFH
glycosyl transferase group 1 family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 family glycosyl transferase
13_1_40cm_2_scaffold_1483_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(24853..26082)
-----------------
DNA (1230bp)
protein (410aa)
glycosyl transferase, group 1 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4D78 rbh
mshA4; group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
mshA4; group 1 glycosyl transferase
13_1_40cm_2_scaffold_1483_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(26281..27198)
-----------------
DNA (918bp)
protein (306aa)
Capsular polysaccharide export protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SZA5_ALCXX
hypothetical protein; K01991 polysaccharide export outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
capsular polysaccharide export protein
13_1_40cm_2_scaffold_1483_26
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(27211..28221)
-----------------
DNA (1011bp)
protein (337aa)
Fis family transcriptional regulator n=1 Tax=Geobacillus sp. A8 RepID=T0PYE8_9BACI
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PAS modulated Fis family sigma-54-specific transcriptional regulator
13_1_40cm_2_scaffold_1483_27
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(28531..29010)
-----------------
DNA (480bp)
protein (160aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
13_1_40cm_2_scaffold_1483_28
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

29144..29641
-----------------
DNA (498bp)
protein (166aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Z55_SOLUE
rpoE; RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
ECF subfamily RNA polymerase sigma-24 factor
13_1_40cm_2_scaffold_1483_29
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

29857..30360
-----------------
DNA (504bp)
protein (168aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
13_1_40cm_2_scaffold_1483_trna_1
unknown

Not on your lists

30900..30983
-----------------
DNA (84bp)
transferRNA
Displaying items 1-30 of 31 in total

View Taxonomy