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13_1_40cm_2_scaffold_1566

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1566_1
unknown

Not on your lists

comp(1..120)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_2_scaffold_1566_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(943..1797)
DNA (855bp) protein (285aa)
metallo-beta-lactamase family-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Metallo-beta-lactamase superfamily protein id=4401260 bin=GWC2_Methylomirabilis_70_24 species=uncultured bacterium CSL144 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
blaB; metallo-beta-lactamase family protein
13_1_40cm_2_scaffold_1566_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1804..2580)
DNA (777bp) protein (259aa)
putative ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter id=3813269 bin=GWF2_Methylomirabilis_70_14 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_2_scaffold_1566_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2583..3068)
DNA (486bp) protein (162aa)
UPI000297112C related cluster id=2304939 bin=GWA2_Methylomirabilis_73_35 species=Thermus oshimai genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter ATPase Tax=GWA2_Rokubacteria_73_35_curated
livG3; high-affinity branched-chain amino acid transport ATP-binding protein LivG
13_1_40cm_2_scaffold_1566_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3295..4218)
DNA (924bp) protein (308aa)
ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Inner-membrane translocator id=2751017 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease
13_1_40cm_2_scaffold_1566_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4215..5084)
DNA (870bp) protein (290aa)
amino acid ABC transporter Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
ABC-type transporter, integral membrane subunit id=4137668 bin=GWF2_Methylomirabilis_70_14 species=Desulfitobacterium dichloroeliminans genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ABC transporter
13_1_40cm_2_scaffold_1566_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5179..6393)
DNA (1215bp) protein (405aa)
Extracellular ligand-binding receptor id=4401190 bin=GWC2_Methylomirabilis_70_24 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
extracellular ligand-binding receptor
13_1_40cm_2_scaffold_1566_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6461..6901)
DNA (441bp) protein (147aa)
putative 4-hydroxybenzoyl-CoA thioesterase; K01075 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
4-hydroxybenzoyl-CoA thioesterase id=4401184 bin=GWC2_Methylomirabilis_70_24 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
thioesterase superfamily protein
13_1_40cm_2_scaffold_1566_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6902..8395)
DNA (1494bp) protein (498aa)
benzoate-CoA ligase family Tax=GWA2_Rokubacteria_70_23_curated
Benzoate-CoA ligase family id=4137710 bin=GWF2_Methylomirabilis_70_14 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
benzoate-CoA ligase family
13_1_40cm_2_scaffold_1566_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8392..9210)
DNA (819bp) protein (273aa)
NUDIX hydrolase id=4464477 bin=GWA2_Methylomirabilis_73_35 species=Frankia sp. EUN1f genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_1566_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9251..9718)
DNA (468bp) protein (156aa)
Pyridoxamine 5'-phosphate oxidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pyridoxamine 5''-phosphate oxidase id=4696791 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pyridoxamine 5'-phosphate oxidase
13_1_40cm_2_scaffold_1566_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9891..11027)
DNA (1137bp) protein (379aa)
putative acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative acyl-CoA dehydrogenase (EC:1.3.99.-)
Butyryl-CoA dehydrogenase id=4464474 bin=GWA2_Methylomirabilis_73_35 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1566_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11040..12236)
DNA (1197bp) protein (399aa)
Acyl-CoA dehydrogenase domain protein id=4696833 bin=GWC2_Methylomirabilis_70_16 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA dehydrogenase Tax=GWC2_Rokubacteria_70_16_curated
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_2_scaffold_1566_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12332..13573
DNA (1242bp) protein (414aa)
hydantoinase/carbamoylase amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family id=4464472 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1566_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13716..14585
DNA (870bp) protein (290aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
Cytochrome c oxidase subunit 2 id=4464471 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c oxidase subunit II
13_1_40cm_2_scaffold_1566_16
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14713..14874)
DNA (162bp) protein (54aa)
Tax=RBG_13_Deltaproteobacteria_65_10_curated
13_1_40cm_2_scaffold_1566_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15061..15219)
DNA (159bp) protein (53aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_2_scaffold_1566_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15496..15723)
DNA (228bp) protein (76aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_2_scaffold_1566_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16242..16985
DNA (744bp) protein (248aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
Cytochrome c oxidase, subunit I id=4464470 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c oxidase subunit III
13_1_40cm_2_scaffold_1566_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16985..17284
DNA (300bp) protein (100aa)
Putative uncharacterized protein id=4464469 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_1566_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17281..17931
DNA (651bp) protein (217aa)
ctaG; putative CtaG protein Tax=GWA2_Rokubacteria_73_35_curated
Putative CtaG protein id=4464468 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
13_1_40cm_2_scaffold_1566_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17901..18002
DNA (102bp) protein (34aa)
ctaG; putative CtaG protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_1566_23
unknown

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18127..18324
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_2_scaffold_1566_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18403..19713
DNA (1311bp) protein (437aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase id=3102365 bin=GWC2_Methylomirabilis_70_16 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_1566_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19718..20296
DNA (579bp) protein (193aa)
NAD-dependent epimerase/dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NAD-dependent epimerase/dehydratase id=2287859 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NAD-dependent epimerase/dehydratase family protein
Displaying 25 items

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