ggKbase home page

13_1_40cm_2_scaffold_162

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_162_1
unknown

Not on your lists

comp(1..168)
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_2_scaffold_162_2
unknown

Not on your lists

288..647
DNA (360bp) protein (120aa)

This feature has no annotations

13_1_40cm_2_scaffold_162_3
unknown

Not on your lists

682..777
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_40cm_2_scaffold_162_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

915..1802
DNA (888bp) protein (296aa)
Uncharacterized protein id=4232749 bin=GWC2_Methylomirabilis_70_16 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Uncharacterized protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_2_scaffold_162_5
unknown

Not on your lists

2332..3996
DNA (1665bp) protein (555aa)

This feature has no annotations

13_1_40cm_2_scaffold_162_6
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

4834..5955
DNA (1122bp) protein (374aa)
NAD-dependent epimerase/dehydratase id=3220978 bin=GWC2_OP3_44_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
NAD-dependent epimerase/dehydratase Tax=GWF2_WOR_2_43_52_curated
NAD-dependent epimerase/dehydratase
13_1_40cm_2_scaffold_162_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

6004..7335
DNA (1332bp) protein (444aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:ABJ88405.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ABJ88405.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Can
UDP-glucose 6-dehydrogenase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PL5_SOLUE
13_1_40cm_2_scaffold_162_8
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

7370..8200
DNA (831bp) protein (277aa)
type 12 methyltransferase Tax=RBG_16_RIF03_38_10_curated
Methyltransferase type 12 id=2648970 bin=GWC1_OD1_38_17 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
type 12 methyltransferase
13_1_40cm_2_scaffold_162_9

Not on your lists

8197..9711
DNA (1515bp) protein (505aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BX40_ANAMD
Uncharacterized protein {ECO:0000313|EMBL:KKM94507.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
membrane protein
13_1_40cm_2_scaffold_162_10
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9858..10733
DNA (876bp) protein (292aa)
Methyltransferase FkbM family n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4ST80_STRM5
FkbM family methyltransferase
Tax=BJP_IG2102_Syntrophobacterales_60_12
13_1_40cm_2_scaffold_162_11
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

10727..11683
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z263_METPS
hypothetical protein Tax=RBG_16_RIF03_38_10_curated
hypothetical protein
13_1_40cm_2_scaffold_162_12
Dictyoglomus thermophilum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

11680..13035
DNA (1356bp) protein (452aa)
Membrane protein, putative n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YCR1_DICT6
hypothetical protein
Membrane protein, putative {ECO:0000313|EMBL:ACI19873.1}; TaxID=309799 species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus thermophilum (strain ATCC 3
13_1_40cm_2_scaffold_162_13
GWF2_Planctomycetes_40_8_curated, Planctomycetes, Bacteria

Not on your lists

13090..14799
DNA (1710bp) protein (570aa)
Putative carbamoyl transferase; K00612 carbamoyltransferase [EC:2.1.3.-] Tax=GWF2_Planctomycetes_40_8_curated
Predicted carbamoyl transferase, NodU family id=4349805 bin=GWF2_Lentisphaerae_49_21 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
carbamoyl transferase
13_1_40cm_2_scaffold_162_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

14796..15872
DNA (1077bp) protein (359aa)
putative succinoglycan biosynthesis protein ExoA (EC:2.4.-.-)
Putative Succinoglycan biosynthesis protein ExoA {ECO:0000313|EMBL:CBK40648.1}; EC=2.4.-.- {ECO:0000313|EMBL:CBK40648.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; N
Putative Succinoglycan biosynthesis protein ExoA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBN9_9BACT
13_1_40cm_2_scaffold_162_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

15869..16651
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBP0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40649.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_2_scaffold_162_16
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

16688..17848
DNA (1161bp) protein (387aa)
arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase (EC:2.6.1.-) Tax=CG_Arma_02
UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBP1_9BACT
spore coat polysaccharide biosynthesis protein SpsC
13_1_40cm_2_scaffold_162_17
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

18181..19407
DNA (1227bp) protein (409aa)
Lipopolysaccharide biosynthesis protein id=2278791 bin=GWA2_Elusimicrobia_69_24 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
lipopolysaccharide biosynthesis protein Tax=GWA2_Elusimicrobia_69_24_curated
putative lipopolysaccharide biosynthesis protein
13_1_40cm_2_scaffold_162_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19661..20314
DNA (654bp) protein (218aa)
Sugar transferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYI3_ALIDB
sugar transferase
Sugar transferase {ECO:0000313|EMBL:AEB83692.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicy
13_1_40cm_2_scaffold_162_19
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20331..22148
DNA (1818bp) protein (606aa)
polysaccharide biosynthesis protein CapD id=14624989 bin=bin5_DeltaP species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria rbh
polysaccharide biosynthesis protein CapD Tax=CSP1_8_Deltaproteobacteria
polysaccharide biosynthesis protein CapD
13_1_40cm_2_scaffold_162_20
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

22155..23126
DNA (972bp) protein (324aa)
geranylgeranyl reductase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Geranylgeranyl reductase id=3346213 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
geranylgeranyl reductase family protein
Displaying 20 items

View Taxonomy