ggKbase home page

13_1_40cm_2_scaffold_1672

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1672_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

33..716
DNA (684bp) protein (228aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
alias=16ft_combo_ws3_scaffold_11273_17 id=24502012 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_2_scaffold_1672_2
unknown

Not on your lists

comp(1012..1248)
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_40cm_2_scaffold_1672_3
unknown

Not on your lists

comp(1561..2220)
DNA (660bp) protein (220aa)

This feature has no annotations

13_1_40cm_2_scaffold_1672_4
unknown

Not on your lists

comp(2249..2584)
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_2_scaffold_1672_5
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

2785..4668
DNA (1884bp) protein (628aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037036D2
transcriptional regulator domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
transcriptional regulator domain-containing protein
13_1_40cm_2_scaffold_1672_6
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

4719..5159
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036DE5E3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84332.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source=
13_1_40cm_2_scaffold_1672_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

5596..7290
DNA (1695bp) protein (565aa)
Putative peptidase {ECO:0000313|EMBL:CBH25170.1}; EC=3.4.21.- {ECO:0000313|EMBL:CBH25170.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Sa
Acyl-peptide hydrolase, putative n=2 Tax=Salinibacter ruber RepID=Q2S0Z0_SALRD
peptidase
13_1_40cm_2_scaffold_1672_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

7344..8411
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F6A5A
YVTN beta-propeller repeat-containing protein {ECO:0000313|EMBL:EEF62017.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia s
YVTN beta-propeller repeat-containing protein
13_1_40cm_2_scaffold_1672_9
unknown

Not on your lists

comp(8584..9156)
DNA (573bp) protein (191aa)

This feature has no annotations

13_1_40cm_2_scaffold_1672_10
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

9454..10146
DNA (693bp) protein (231aa)
Deoxynucleoside kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHA3_KORVE
deoxynucleoside kinase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
deoxynucleoside kinase
13_1_40cm_2_scaffold_1672_11

Not on your lists

comp(10415..11911)
DNA (1497bp) protein (499aa)
Filamentation induced by cAMP protein Fic n=1 Tax=mine drainage metagenome RepID=T1C5D6_9ZZZZ
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:EQD48214.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage me
filamentation induced by cAMP protein fic
13_1_40cm_2_scaffold_1672_12

Not on your lists

comp(11908..12153)
DNA (246bp) protein (82aa)
Filamentation induced by cAMP protein Fic n=1 Tax=mine drainage metagenome RepID=T1C5D6_9ZZZZ
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:EQD48214.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage me
filamentation induced by cAMP protein fic
13_1_40cm_2_scaffold_1672_13
GWF2_Elusimicrobia_62_30_curated, Elusimicrobia, Bacteria

Not on your lists

12592..13995
DNA (1404bp) protein (468aa)
sodium:dicarboxylate symporter n=1 Tax=Pedobacter arcticus RepID=UPI000361FEF1
sodium:dicarboxylate symporter; K11102 proton glutamate symport protein Tax=GWF2_Elusimicrobia_62_30_curated
sodium:dicarboxylate symporter
13_1_40cm_2_scaffold_1672_14
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14396..15544
DNA (1149bp) protein (383aa)
Glycosylasparaginase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IU43_KORVE
glycosylasparaginase
Glycosylasparaginase {ECO:0000313|EMBL:ABF39607.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter v
13_1_40cm_2_scaffold_1672_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

15634..16764
DNA (1131bp) protein (377aa)
putative dehydrogenase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
2-hydroxyglutarate dehydrogenase id=1697515 bin=GWA2__Bacteriovorax-rel_49_15 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
putative dehydrogenase
13_1_40cm_2_scaffold_1672_16
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16837..18246)
DNA (1410bp) protein (470aa)
TyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:00002
tyrosyl-tRNA synthetase n=1 Tax=Desulfurispora thermophila RepID=UPI00035FF1DA
13_1_40cm_2_scaffold_1672_17
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(18369..18977)
DNA (609bp) protein (203aa)
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RS6_SOLUE
13_1_40cm_2_scaffold_1672_18

Not on your lists

comp(19018..19392)
DNA (375bp) protein (125aa)
Single-stranded DNA binding protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZG86_9ZZZZ
Single-stranded DNA binding protein {ECO:0000313|EMBL:EQD28740.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metageno
hypothetical protein
13_1_40cm_2_scaffold_1672_19
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(19419..20786)
DNA (1368bp) protein (456aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPK3_9BURK
hypothetical membrane protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_40cm_2_scaffold_1672_20

Not on your lists

comp(20796..21389)
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 270 RepID=E3T6U1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ADC36035.1}; TaxID=698387 species="Bacteria; environmental samples.;" source="uncultured bacterium 270.;"
13_1_40cm_2_scaffold_1672_21
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(21426..22052)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAU6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_40cm_2_scaffold_1672_22
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(22081..22362)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFP6_9BRAD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
Displaying 22 items

View Taxonomy