ggKbase home page

13_1_40cm_2_scaffold_179

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_179_1
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..112)
DNA (111bp) protein (37aa)
short-chain dehydrogenase/reductase SDR Tax=GWC2_Syntrophus_56_31_curated
13_1_40cm_2_scaffold_179_2
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(120..743)
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3R1_ACIC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO33364.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain A
13_1_40cm_2_scaffold_179_3
unknown

Not on your lists

comp(773..964)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_2_scaffold_179_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1043..2083)
DNA (1041bp) protein (347aa)
Cytochrome bd quinol oxidase subunit 2 apoprotein {ECO:0000313|EMBL:ABF42252.1}; EC=1.10.3.- {ECO:0000313|EMBL:ABF42252.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacte
Cytochrome bd quinol oxidase subunit 2 apoprotein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ8_KORVE rbh
cytochrome d ubiquinol oxidase, subunit II
13_1_40cm_2_scaffold_179_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(2091..3428)
DNA (1338bp) protein (446aa)
Cytochrome bd quinol oxidase subunit 1 apoprotein {ECO:0000313|EMBL:ABF42253.1}; EC=1.10.3.- {ECO:0000313|EMBL:ABF42253.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacte
Cytochrome bd quinol oxidase subunit 1 apoprotein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ7_KORVE rbh
cytochrome bd ubiquinol oxidase, subunit I
13_1_40cm_2_scaffold_179_6
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(3510..4016)
DNA (507bp) protein (169aa)
Thioesterase superfamily n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ6_KORVE
thioesterase
Thioesterase superfamily {ECO:0000313|EMBL:ABF42254.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (stra
13_1_40cm_2_scaffold_179_7
unknown

Not on your lists

comp(4013..4462)
DNA (450bp) protein (150aa)

This feature has no annotations

13_1_40cm_2_scaffold_179_8

Not on your lists

4637..4945
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6Q007_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI00516.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
13_1_40cm_2_scaffold_179_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5015..5824)
DNA (810bp) protein (270aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ4_KORVE
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABF42256.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter v
13_1_40cm_2_scaffold_179_10
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

5924..6535
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036ED620
peptidase S16, lon domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
ATP-dependent protease La domain-containing protein
13_1_40cm_2_scaffold_179_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

6608..8164
DNA (1557bp) protein (519aa)
Magnesium protoporphyrin chelatase, putative n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ3_KORVE rbh
magnesium protoporphyrin chelatase
Magnesium protoporphyrin chelatase, putative {ECO:0000313|EMBL:ABF42257.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribac
13_1_40cm_2_scaffold_179_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8257..9495
DNA (1239bp) protein (413aa)
von Willebrand factor, type A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ2_KORVE rbh
von Willebrand factor A
von Willebrand factor, type A {ECO:0000313|EMBL:ABF42258.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis
13_1_40cm_2_scaffold_179_13
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9647..11569)
DNA (1923bp) protein (641aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR65_KORVE rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40635.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_1_40cm_2_scaffold_179_14
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(11631..11885)
DNA (255bp) protein (85aa)
Zinc finger, CDGSH-type n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ1_KORVE
Zinc finger, CDGSH-type
Zinc finger, CDGSH-type {ECO:0000313|EMBL:ABF42259.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_1_40cm_2_scaffold_179_15
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(12108..13226)
DNA (1119bp) protein (373aa)
Glycosyl transferase, group 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILI5_KORVE
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABF42265.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis
13_1_40cm_2_scaffold_179_16

Not on your lists

comp(13500..13988)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QIJ2_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBI07058.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
13_1_40cm_2_scaffold_179_17
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(14103..15509)
DNA (1407bp) protein (469aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILI0_KORVE
Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABF42270.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Kor
13_1_40cm_2_scaffold_179_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15506..17092)
DNA (1587bp) protein (529aa)
PAS/PAC sensor hybrid histidine kinase id=4942499 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS/PAC sensor hybrid histidine kinase Tax=GWC2_Rokubacteria_70_16_curated
putative PAS/PAC sensor protein
13_1_40cm_2_scaffold_179_19
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(17424..18110)
DNA (687bp) protein (229aa)
Putative phophoslipid binding protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RL3_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
phophoslipid binding protein
13_1_40cm_2_scaffold_179_20
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(18383..20401)
DNA (2019bp) protein (673aa)
Glycosyl hydrolase, BNR repeat protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILH8_KORVE rbh
BNR repeat-containing glycosyl hydrolase rbh
Glycosyl hydrolase, BNR repeat protein {ECO:0000313|EMBL:ABF42272.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" so
13_1_40cm_2_scaffold_179_21
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(20548..22167)
DNA (1620bp) protein (540aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILH7_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF42273.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
13_1_40cm_2_scaffold_179_22
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

22457..23815
DNA (1359bp) protein (453aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILH5_KORVE
Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABF42275.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Kor
13_1_40cm_2_scaffold_179_23
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

23935..25776
DNA (1842bp) protein (614aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; C
Multi-sensor signal transduction histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILH4_KORVE
multi-sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_179_24
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

25866..26525
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILH3_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF42277.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
13_1_40cm_2_scaffold_179_25
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(26671..27804)
DNA (1134bp) protein (378aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
13_1_40cm_2_scaffold_179_26
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28002..28823
DNA (822bp) protein (274aa)
Glycosyl transferase family 2 n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QJH1_SPILD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADB38884.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATC
13_1_40cm_2_scaffold_179_27
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

28865..30112
DNA (1248bp) protein (416aa)
Glycosyl transferase, family 2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISV9_KORVE
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABF40041.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis
Displaying 27 items

View Taxonomy