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13_1_40cm_2_scaffold_2042

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2042_1
unknown

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comp(312..557)
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_40cm_2_scaffold_2042_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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817..1170
DNA (354bp) protein (118aa)
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RBG_16_Gemmatimonadetes_66_8_curated
mutS; DNA mismatch repair protein MutS
DNA mismatch repair protein MutS id=1761520 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
13_1_40cm_2_scaffold_2042_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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1711..2934
DNA (1224bp) protein (408aa)
cbs; cystathionine beta-synthase (EC:4.2.1.22); K01697 cystathionine beta-synthase [EC:4.2.1.22] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cbs; cystathionine beta-synthase (EC:4.2.1.22)
Cystathionine beta-synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM2_GEMAT
13_1_40cm_2_scaffold_2042_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2934..3965
DNA (1032bp) protein (344aa)
D-alanine/D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RBG_16_Gemmatimonadetes_66_8_curated
D-alanine--D-alanine ligase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2S942_HAHCH
D-alanine--D-alanine ligase
13_1_40cm_2_scaffold_2042_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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3988..4806
DNA (819bp) protein (273aa)
rhomboid family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Peptidase S54, rhomboid domain protein
Rhomboid family protein id=1251408 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
13_1_40cm_2_scaffold_2042_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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4889..5833
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP5_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_2_scaffold_2042_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5830..6030
DNA (201bp) protein (67aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_2_scaffold_2042_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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6048..6557
DNA (510bp) protein (170aa)
Putative 6-pyruvoyl tetrahydropterin synthase n=1 Tax=uncultured bacterium BAC10-4 RepID=Q4JIS7_9BACT
6-pyruvoyl-tetrahydropterin synthase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
6-pyruvoyl-tetrahydropterin synthase
13_1_40cm_2_scaffold_2042_9
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6554..7156
DNA (603bp) protein (201aa)
1-pyrroline-5-carboxylate synthetase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465Y1_METBF
Delta 1-pyrroline-5-carboxylate synthetase {ECO:0000313|EMBL:AKB14823.1}; TaxID=1434121 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" sourc
delta 1-pyrroline-5-carboxylate synthetase
13_1_40cm_2_scaffold_2042_10
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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7166..8041
DNA (876bp) protein (292aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0X2_NITHN
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADE14529.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitros
13_1_40cm_2_scaffold_2042_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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8059..8421
DNA (363bp) protein (121aa)
4a-hydroxytetrahydrobiopterin dehydratase {ECO:0000256|SAAS:SAAS00118034}; EC=4.2.1.96 {ECO:0000256|SAAS:SAAS00118034};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetale
Pterin-4a-carbinolamine dehydratase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJV0_SINAD
pterin-4a-carbinolamine dehydratase
13_1_40cm_2_scaffold_2042_12
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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8427..9878
DNA (1452bp) protein (484aa)
para-aminobenzoate synthase subunit I (EC:4.1.3.27)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E6109E
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP69139.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="
13_1_40cm_2_scaffold_2042_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(10484..11833)
DNA (1350bp) protein (450aa)
trmE; putative tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
tRNA modification GTPase MnmE n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP6_GEMAT
trmE; putative tRNA modification GTPase TrmE
13_1_40cm_2_scaffold_2042_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(11850..13472)
DNA (1623bp) protein (541aa)
Membrane protein insertase YidC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP7_GEMAT
oxaA; inner membrane protein OxaA; K03217 preprotein translocase subunit YidC Tax=RBG_16_Gemmatimonadetes_66_8_curated
Membrane protein oxaA
13_1_40cm_2_scaffold_2042_15
Synechococcus sp. JA-3-3Ab, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(13515..13742)
DNA (228bp) protein (76aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8L736_9CYAN
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000255|HAMAP-Rule:MF_00386}; TaxID=321327 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="S
13_1_40cm_2_scaffold_2042_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(14078..14239)
DNA (162bp) protein (54aa)
Ribosomal protein L34 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEQ0_GEMAT
rpmH; 50S ribosomal protein L34; K02914 large subunit ribosomal protein L34 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rpmH; 50S ribosomal protein L34
13_1_40cm_2_scaffold_2042_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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14364..15749
DNA (1386bp) protein (462aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3G6_GEMAT
dnaA; chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
dnaA; chromosomal replication initiator protein DnaA
13_1_40cm_2_scaffold_2042_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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15993..17099
DNA (1107bp) protein (369aa)
dnaN; DNA polymerase III beta subunit (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=GWC2_Gemmatimonadetes_71_10_curated
DNA polymerase III subunit beta n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3G7_GEMAT
DNA polymerase III, beta subunit
13_1_40cm_2_scaffold_2042_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(17156..17836)
DNA (681bp) protein (227aa)
monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] id=12555739 bin=CNBR_ACIDO species=unknown genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
monofunctional biosynthetic peptidoglycan transglycosylase
13_1_40cm_2_scaffold_2042_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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18069..19490
DNA (1422bp) protein (474aa)
putative serine/threonine protein kinase (EC:2.7.11.1); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAM0_GEMAT
protein kinase
13_1_40cm_2_scaffold_2042_21
unknown

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comp(19518..19613)
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 21 items

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