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13_1_40cm_2_scaffold_200

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_200_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..768
DNA (768bp) protein (256aa)
glycosyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=4546758 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoria acuminata genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycogen synthase
13_1_40cm_2_scaffold_200_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

765..2222
DNA (1458bp) protein (486aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4546759 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_200_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2260..3000
DNA (741bp) protein (247aa)
WbqC-like family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4059722 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_200_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3001..3615
DNA (615bp) protein (205aa)
LmbE family protein id=4059721 bin=GWA2_Methylomirabilis_73_35 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LmbE family protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_200_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3737..4684
DNA (948bp) protein (316aa)
putative uDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC:2.6.1.-) Tax=GWA2_Rokubacteria_73_35_curated
putative uDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC:2.6.1.-)
Putative UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase id=4059720 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_200_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4684..5799
DNA (1116bp) protein (372aa)
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase (EC:2.7.8.-) Tax=GWA2_Rokubacteria_73_35_curated
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase id=4059719 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
glycosyl transferase family protein
13_1_40cm_2_scaffold_200_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5781..6278
DNA (498bp) protein (166aa)
hypothetical protein; K09928 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4059718 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_200_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6275..7141
DNA (867bp) protein (289aa)
galU; glucose-1-phosphate uridylyltransferase (EC:2.7.7.9) Tax=GWA2_Rokubacteria_73_35_curated
galU; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] id=14625246 bin=bin7_NC10_sister species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=bin7_NC10_sister organism_group=NC10
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
13_1_40cm_2_scaffold_200_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7413..8618
DNA (1206bp) protein (402aa)
Quinolinate phosphoribosyl transferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nicotinate phosphoribosyltransferase id=4082176 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nicotinate phosphoribosyltransferase
13_1_40cm_2_scaffold_200_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8629..9420
DNA (792bp) protein (264aa)
indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase id=4059714 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_200_11
unknown

Not on your lists

9423..9593
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_2_scaffold_200_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9590..10246
DNA (657bp) protein (219aa)
trpF; N-(5'-phosphoribosyl)anthranilate isomerase (PRAI) (EC:5.3.1.24) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-(5'-phosphoribosyl)anthranilate isomerase; K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] id=14627082 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
13_1_40cm_2_scaffold_200_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10243..11442
DNA (1200bp) protein (400aa)
trpB; tryptophan synthase subunit beta (EC:4.2.1.20) Tax=GWA2_Rokubacteria_73_35_curated
trpB; tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain id=4059712 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_200_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11439..12263
DNA (825bp) protein (275aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain id=4059711 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_200_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12346..13206
DNA (861bp) protein (287aa)
accD; acetyl-CoA carboxylase carboxyltransferase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta id=3240638 bin=GWC2_Methylomirabilis_70_16 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetyl-CoA carboxyl transferase
13_1_40cm_2_scaffold_200_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13214..14530
DNA (1317bp) protein (439aa)
FolC bifunctional protein; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
folylpolyglutamate synthase (folylpoly-gamma-glutamatesynthetase) (EC:6.3.2.17)
FolC bifunctional protein id=4811710 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_2_scaffold_200_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14551..16791
DNA (2241bp) protein (747aa)
organic solvent tolerance protein; K04744 LPS-assembly protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
organic solvent tolerance protein; K04744 LPS-assembly protein id=14627077 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
organic solvent tolerance protein
13_1_40cm_2_scaffold_200_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16788..17885
DNA (1098bp) protein (366aa)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DegT/DnrJ/EryC1/StrS family protein id=14627076 bin=bin7_NC10_sister species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
DegT/DnrJ/EryC1/StrS aminotransferase
13_1_40cm_2_scaffold_200_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17882..19192
DNA (1311bp) protein (437aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
nucleotide sugar dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Nucleotide-sugar dehydrogenase id=4811707 bin=GWC2_Methylomirabilis_70_24 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_2_scaffold_200_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19499..20383
DNA (885bp) protein (295aa)
4-hydroxybenzoate polyprenyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative conserved membrane protein id=4756383 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-hydroxybenzoate polyprenyltransferase
13_1_40cm_2_scaffold_200_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20393..21472
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LEF1_THEPS
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_2_scaffold_200_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21474..22292
DNA (819bp) protein (273aa)
glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate--tRNA ligase id=4756400 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamyl-tRNA synthetase
Displaying 22 items

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