ggKbase home page

13_1_40cm_2_scaffold_2152

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2152_1
unknown

Not on your lists

comp(449..664)
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_2_scaffold_2152_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1843..2022)
DNA (180bp) protein (60aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_2_scaffold_2152_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2019..3536)
DNA (1518bp) protein (506aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] id=12557017 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
leucyl aminopeptidase (EC:3.4.11.1)
13_1_40cm_2_scaffold_2152_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3617..4171
DNA (555bp) protein (185aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_2_scaffold_2152_5
unknown

Not on your lists

4319..4564
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_40cm_2_scaffold_2152_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4571..6961
DNA (2391bp) protein (797aa)
Gll1201 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLC5_GLOVI
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_2_scaffold_2152_7
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

7006..9384
DNA (2379bp) protein (793aa)
Macrolide transporter ATP-binding /permease protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QSA7_9CYAN
macrolide transporter ATP-binding/permease protein
Macrolide transporter ATP-binding /permease protein {ECO:0000313|EMBL:AGY60600.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter ki
13_1_40cm_2_scaffold_2152_8
unknown

Not on your lists

comp(9618..10241)
DNA (624bp) protein (208aa)

This feature has no annotations

13_1_40cm_2_scaffold_2152_9
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(10249..10662)
DNA (414bp) protein (138aa)
Outer membrane protein/protective antigen OMA87-like protein Tax=RBG_16_Zixibacteria_53_22_curated
hypothetical protein
hypothetical protein id=24657888 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
13_1_40cm_2_scaffold_2152_10
unknown

Not on your lists

11179..11406
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_40cm_2_scaffold_2152_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11898..12218)
DNA (321bp) protein (107aa)
Mov34/MPN/PAD-1 family protein n=1 Tax=Halorubrum kocurii JCM 14978 RepID=M0NM80_9EURY
Mov34/MPN/PAD-1 family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Mov34/MPN/PAD-1 family protein
13_1_40cm_2_scaffold_2152_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(12290..13477)
DNA (1188bp) protein (396aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=5 Tax=Pelosinus fermentans RepID=I8S7B2_9FIRM
13_1_40cm_2_scaffold_2152_13

Not on your lists

13731..15893
DNA (2163bp) protein (721aa)
hypothetical protein n=2 Tax=Aminicenantes RepID=UPI00037314AE rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN15478.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidase S9 prolyl oligopeptidase
13_1_40cm_2_scaffold_2152_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15926..18634
DNA (2709bp) protein (903aa)
putative metallopeptidase; K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
peptidase M16 domain-containing protein; K07263 zinc protease [EC:3.4.24.-] id=17439094 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
peptidase M16 domain-containing protein
13_1_40cm_2_scaffold_2152_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18783..19700)
DNA (918bp) protein (306aa)
prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
tyrA; prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12] id=12557015 bin=CNBR_ACIDO species=Lactobacillus plantarum genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
prephenate dehydrogenase (EC:1.3.1.12)
13_1_40cm_2_scaffold_2152_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(19805..20851)
DNA (1047bp) protein (349aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NJ1_SOLUE
13_1_40cm_2_scaffold_2152_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(20878..21177)
DNA (300bp) protein (100aa)
chorismate mutase (EC:5.4.99.5); K04093 chorismate mutase [EC:5.4.99.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Chorismate mutase n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74C47_GEOSL
chorismate mutase
13_1_40cm_2_scaffold_2152_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(21180..21995)
DNA (816bp) protein (272aa)
tryptophan synthase subunit alpha; K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
tryptophan synthase, alpha chain; K01695 tryptophan synthase alpha chain [EC:4.2.1.20] id=12557014 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
tryptophan synthase subunit alpha
13_1_40cm_2_scaffold_2152_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(22154..23383)
DNA (1230bp) protein (410aa)
trpB; tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
tryptophan synthase subunit beta (EC:4.2.1.20); K01696 tryptophan synthase beta chain [EC:4.2.1.20] id=12557013 bin=CNBR_ACIDO species=Mycobacterium hassiacum genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
trpB; tryptophan synthase subunit beta
13_1_40cm_2_scaffold_2152_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(23542..24153)
DNA (612bp) protein (204aa)
trpF; n-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24); K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phosphoribosylanthranilate isomerase (EC:5.3.1.24); K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] id=12557012 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
N-(5'-phosphoribosyl)anthranilate isomerase
13_1_40cm_2_scaffold_2152_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(24437..25369)
DNA (933bp) protein (311aa)
trpC_[H]; Indole-3-glycerol phosphate synthase (EC:4.1.1.48) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
hypothetical protein id=12557011 bin=CNBR_ACIDO species=Spiribacter sp. UAH-SP71 genus=Spiribacter taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_2_scaffold_2152_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(25366..26403)
DNA (1038bp) protein (346aa)
anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
anthranilate phosphoribosyltransferase id=12557010 bin=CNBR_ACIDO species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
anthranilate phosphoribosyltransferase
13_1_40cm_2_scaffold_2152_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(26433..26999)
DNA (567bp) protein (189aa)
trpG; anthranilate synthase component II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glutamine amidotransferase of anthranilate synthase; K01658 anthranilate synthase component II [EC:4.1.3.27] id=14625548 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
trpG; anthranilate synthase component II (EC:4.1.3.27)
13_1_40cm_2_scaffold_2152_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(27112..28584)
DNA (1473bp) protein (491aa)
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
anthranilate synthase, component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] id=12557008 bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
anthranilate synthase component I (EC:4.1.3.27)
13_1_40cm_2_scaffold_2152_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(28565..30034)
DNA (1470bp) protein (490aa)
hypothetical protein; K13832 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein; K13832 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] id=12557007 bin=CNBR_ACIDO species=Schlesneria paludicola genus=Schlesneria taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
shikimate 5-dehydrogenase
13_1_40cm_2_scaffold_2152_26
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

30282..32135
DNA (1854bp) protein (618aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=12557006 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
hypothetical protein
13_1_40cm_2_scaffold_2152_27
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

32135..34375
DNA (2241bp) protein (747aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
YD repeat-containing protein id=12557005 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
YD repeat-containing protein
13_1_40cm_2_scaffold_2152_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(34439..35278)
DNA (840bp) protein (280aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_2_scaffold_2152_29
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(35275..35970)
DNA (696bp) protein (232aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12557003 bin=CNBR_ACIDO species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ECF subfamily RNA polymerase sigma-24 factor
13_1_40cm_2_scaffold_2152_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

35975..37336
DNA (1362bp) protein (454aa)
TPR repeat- and protein kinase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12557002 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Displaying 30 items

View Taxonomy