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13_1_40cm_2_scaffold_2258

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2258_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1..1164)
DNA (1164bp) protein (388aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
DNA ligase D id=4930074 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA ligase D
13_1_40cm_2_scaffold_2258_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1157..2623)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCF9_9BACT
hypothetical protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_2_scaffold_2258_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2651..3514
DNA (864bp) protein (288aa)
Probable DNA repair protein Anae109_0938 id=4930072 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Ku family containing protein; K10979 DNA end-binding protein Ku Tax=GWA2_Rokubacteria_73_35_curated
Ku family containing protein
13_1_40cm_2_scaffold_2258_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3555..4697
DNA (1143bp) protein (381aa)
pyruvate dehydrogenase; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=GWA2_Rokubacteria_73_35_curated
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) id=4930070 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_2258_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4702..5682
DNA (981bp) protein (327aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pyruvate dehydrogenase E1 component subunit beta id=4930068 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transketolase, central region
13_1_40cm_2_scaffold_2258_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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5728..6057
DNA (330bp) protein (110aa)
hypothetical protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=GWA2_Rokubacteria_70_23_curated
Pyruvate dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) id=4005294 bin=GWC2_Methylomirabilis_70_24 species=Natronomonas moolapensis genus=Natronomonas taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_2_scaffold_2258_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6189..6758
DNA (570bp) protein (190aa)
dehydrogenase catalytic domain-containing protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex id=4930066 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
13_1_40cm_2_scaffold_2258_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6755..7126
DNA (372bp) protein (124aa)
dehydrogenase catalytic domain-containing protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex id=3735755 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_2258_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7134..8120
DNA (987bp) protein (329aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14627983 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_2_scaffold_2258_10
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

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8134..8937
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2NGU5_9ACTO rbh
type 11 methyltransferase Tax=RBG_16_Acidobacteria_64_8_curated
methyltransferase
13_1_40cm_2_scaffold_2258_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8959..10347
DNA (1389bp) protein (463aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dihydrolipoyl dehydrogenase id=4930064 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydrolipoamide dehydrogenase
13_1_40cm_2_scaffold_2258_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10354..11172)
DNA (819bp) protein (273aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P0Y7_AZOS1 rbh
metallophosphoesterase
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase
13_1_40cm_2_scaffold_2258_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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11223..12413
DNA (1191bp) protein (397aa)
Major facilitator superfamily MFS_1 transporter id=4930061 bin=GWA2_Methylomirabilis_73_35 species=Sporosarcina newyorkensis genus=Sporosarcina taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
major facilitator superfamily protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_2258_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12452..13096
DNA (645bp) protein (215aa)
pyrrolidone-carboxylate peptidase (EC:3.4.19.3); K01304 pyroglutamyl-peptidase [EC:3.4.19.3] Tax=GWA2_Rokubacteria_73_35_curated
pyrrolidone-carboxylate peptidase (EC:3.4.19.3)
Pyrrolidone-carboxylate peptidase id=4930056 bin=GWA2_Methylomirabilis_73_35 species=Pyrococcus furiosus genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_2258_15
R_NC10_66_22, NC10, Bacteria

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13074..13433
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP06_NITGG
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
13_1_40cm_2_scaffold_2258_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13430..14137
DNA (708bp) protein (236aa)
putative phosphoglycolate phosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Phosphoglycolate phosphatase id=4930053 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative hydrolase
13_1_40cm_2_scaffold_2258_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14147..14290)
DNA (144bp) protein (48aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_2_scaffold_2258_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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14715..16091
DNA (1377bp) protein (459aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Leptospira weilii serovar Ranarum str. ICFT RepID=N1WI19_9LEPT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_40cm_2_scaffold_2258_19
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16079..17293
DNA (1215bp) protein (405aa)
56kDa selenium binding protein (SBP56) n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WT91_9BURK
56kDa selenium binding protein (SBP56) {ECO:0000313|EMBL:EHR68964.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales
Selenium-binding protein, putative
13_1_40cm_2_scaffold_2258_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17262..18005
DNA (744bp) protein (248aa)
SCO1/SenC family protein/methylamine utilization protein MauG Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCO1/SenC family protein/methylamine utilization protein MauG id=12498377 bin=THIO_MID species=Methylobacter marinus genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCO1/SenC family protein/methylamine utilization protein MauG
13_1_40cm_2_scaffold_2258_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18002..18862
DNA (861bp) protein (287aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] Tax=GWA2_Rokubacteria_73_35_curated
sseA; 3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2)
Sulfurtransferase id=2213480 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_2258_22

Not on your lists

18865..19548
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034D573C
Uncharacterized protein {ECO:0000313|EMBL:KKK80601.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cytochrome p450
Displaying 22 items

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