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13_1_40cm_2_scaffold_22848

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_22848_1
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..421
DNA (420bp) protein (140aa)
Glyoxalase {ECO:0000313|EMBL:KJS03230.1}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
Glyoxalase/bleomycin resistance protein/dioxygenase id=1996305 bin=GWB2_Desulfobacterales_56_26 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
PhnB domain-containing protein
13_1_40cm_2_scaffold_22848_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(498..1745)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CH72_KOSOT id=5223084 bin=16ft_combo_ws3_JS1 species=Kosmotoga olearia genus=Kosmotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_2_scaffold_22848_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2431..3423)
DNA (993bp) protein (331aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RBG_16_RIF_WS3X_71_46_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=RPOA_SYNFM id=5223086 bin=16ft_combo_ws3_JS1 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
DNA-directed RNA polymerase subunit alpha
13_1_40cm_2_scaffold_22848_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(3451..4080)
DNA (630bp) protein (210aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=24426611 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_RIF_WS3X_71_46_curated
30S ribosomal protein S4
13_1_40cm_2_scaffold_22848_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(4141..4560)
DNA (420bp) protein (140aa)
RpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 id=24426610 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RBG_16_RIF_WS3X_71_46_curated
RpsK; 30S ribosomal protein S11
13_1_40cm_2_scaffold_22848_6
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4578..4964)
DNA (387bp) protein (129aa)
30S ribosomal protein S13 n=2 Tax=Desulfotomaculum RepID=F6B5R8_DESCC
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxy
13_1_40cm_2_scaffold_22848_7
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(4980..5093)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 id=7200539 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
50S ribosomal protein L36 Tax=RIFOXYC12_FULL_TA06_54_24_curated
50S ribosomal protein L36
13_1_40cm_2_scaffold_22848_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5103..5321)
DNA (219bp) protein (73aa)
translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=24426607 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RBG_16_RIF_WS3X_71_46_curated
translation initiation factor IF-1
13_1_40cm_2_scaffold_22848_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5326..6084)
DNA (759bp) protein (253aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K4M2_HALHC id=5223092 bin=16ft_combo_ws3_JS1 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
methionine aminopeptidase, type I Tax=RBG_16_RIF_WS3X_71_46_curated
13_1_40cm_2_scaffold_22848_10
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6108..6752)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI000382CC6E
Adenylate kinase
13_1_40cm_2_scaffold_22848_11
RBG_16_RIF05_58_8_curated, RIF5, Bacteria

Not on your lists

comp(6749..7264)
DNA (516bp) protein (172aa)
secY; preprotein translocase subunit SecY Tax=RBG_16_RIF05_58_8_curated
secY; preprotein translocase subunit SecY id=7200535 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
secY; preprotein translocase subunit SecY
13_1_40cm_2_scaffold_22848_12
RBG_19FT_COMBO_Deltaproteobacteria_56_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7401..7928
DNA (528bp) protein (176aa)
hypothetical protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_56_10_curated
13_1_40cm_2_scaffold_22848_13
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists


comp(8536..8883)
DNA (348bp) protein (116aa)
50S ribosomal protein L30 n=1 Tax=Halomonas jeotgali RepID=UPI0003672C29
50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000255|HAMAP-Rule:MF_01371}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="
13_1_40cm_2_scaffold_22848_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(8870..9370)
DNA (501bp) protein (167aa)
30S ribosomal protein S5 n=1 Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WS63_BACT2 id=5223097 bin=16ft_combo_ws3_JS1 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RBG_16_RIF_WS3X_71_46_curated
30S ribosomal protein S5
13_1_40cm_2_scaffold_22848_15
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9378..9704)
DNA (327bp) protein (109aa)
50S ribosomal protein L18 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RL18_CARHZ
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carbox
13_1_40cm_2_scaffold_22848_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(9809..10363)
DNA (555bp) protein (185aa)
50S ribosomal protein L6 n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RL6_SYMTH id=5223099 bin=16ft_combo_ws3_JS1 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RBG_16_RIF_WS3X_71_46_curated
rplF; 50S ribosomal protein L6
13_1_40cm_2_scaffold_22848_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(10373..10771)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=2 Tax=Geobacter RepID=RS8_GEOSF id=5223100 bin=16ft_combo_ws3_JS1 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RBG_16_RIF_WS3X_71_46_curated
30S ribosomal protein S8
13_1_40cm_2_scaffold_22848_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(10846..11031)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=7 Tax=Thermotoga RepID=RS14Z_THEMA id=5223101 bin=16ft_combo_ws3_JS1 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
SSU ribosomal protein S14p (S29e) Tax=RBG_16_RIF_WS3X_71_46_curated
30S ribosomal protein S14
13_1_40cm_2_scaffold_22848_19
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11048..11818)
DNA (771bp) protein (257aa)
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RBG_13_Deltaproteobacteria_60_28_curated
50S ribosomal protein L5 id=24426596 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L5
13_1_40cm_2_scaffold_22848_20
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11818..12141)
DNA (324bp) protein (108aa)
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=7200526 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
50S ribosomal protein L24
13_1_40cm_2_scaffold_22848_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(12150..12482)
DNA (333bp) protein (111aa)
50S ribosomal protein L14 n=1 Tax=uncultured Bacteroidetes bacterium RepID=H5SG00_9BACT id=5223104 bin=16ft_combo_ws3_JS1 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RBG_16_RIF_WS3X_71_46_curated
50S ribosomal protein L14
Displaying 21 items

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