ggKbase home page

13_1_40cm_2_scaffold_2381

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2381_1
unknown

Not on your lists

1..1014
DNA (1014bp) protein (338aa)

This feature has no annotations

13_1_40cm_2_scaffold_2381_2
unknown

Not on your lists

1011..1376
DNA (366bp) protein (122aa)

This feature has no annotations

13_1_40cm_2_scaffold_2381_3
RHI_OD1_Kaiserbacteria_53_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

1373..1762
DNA (390bp) protein (130aa)
Hypothetical conserved protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRP8_9BACT
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPHIGHO2_12_FULL_OD1_Kaiserbacteria_53_13_curated
putative integral membrane protein
13_1_40cm_2_scaffold_2381_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1811..2929)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA53_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetratricopeptide TPR_1 repeat-containing protein
13_1_40cm_2_scaffold_2381_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2963..3802
DNA (840bp) protein (280aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
rca:Rcas_3355 arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] id=1246557 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
13_1_40cm_2_scaffold_2381_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3799..4155
DNA (357bp) protein (119aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_
rca:Rcas_3355 arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] id=1246557 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
13_1_40cm_2_scaffold_2381_7
unknown

Not on your lists

comp(4165..4377)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_2_scaffold_2381_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4488..5159)
DNA (672bp) protein (224aa)
hypothetical protein
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_2_scaffold_2381_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5159..5770)
DNA (612bp) protein (204aa)
Glycoside hydrolase, family 13 domain protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LQ53_SYNFM
glycoside hydrolase family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
glycoside hydrolase family 13 protein
13_1_40cm_2_scaffold_2381_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5767..6315)
DNA (549bp) protein (183aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5K6_GEMAT
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_2381_11
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(6391..7932)
DNA (1542bp) protein (514aa)
hypothetical protein; K06888 Tax=RBG_16_Chloroflexi_64_32_curated
Putative uncharacterized protein id=5017121 bin=GWA2_Ignavibacteria_55_11 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
N-acylglucosamine 2-epimerase
13_1_40cm_2_scaffold_2381_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

8390..8566
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B6K0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_2_scaffold_2381_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(8623..9228)
DNA (606bp) protein (202aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
13_1_40cm_2_scaffold_2381_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9225..10853)
DNA (1629bp) protein (543aa)
NAD-dependent aldehyde dehydrogenase; K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MI13_RHOM4
delta-1-pyrroline-5-carboxylate dehydrogenase
13_1_40cm_2_scaffold_2381_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10967..11446
DNA (480bp) protein (160aa)
Glyoxalase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBI4_9RHIZ
glyoxalase/bleomycin resistance protein/dioxygenase; K07104 Tax=RBG_16_Gemmatimonadetes_66_8_curated
glyoxalase
13_1_40cm_2_scaffold_2381_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11454..12599)
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031DFAC0
peptidase M28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative plasma glutamate carboxypeptidase
13_1_40cm_2_scaffold_2381_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12545..12946)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031DFAC0
peptidase M28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M28
13_1_40cm_2_scaffold_2381_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12957..14102)
DNA (1146bp) protein (382aa)
Sensory box sensor histidine kinase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CHI1_MYXFH
PAS/PAC sensor signal transduction histidine kinase Tax=RBG_16_Gemmatimonadetes_66_8_curated
sensory box sensor histidine kinase
13_1_40cm_2_scaffold_2381_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14308..16230
DNA (1923bp) protein (641aa)
glucosamine-6-phosphate deaminase-like protein; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glucosamine-6-phosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A967_GEMAT
glucosamine-6-phosphate isomerase
13_1_40cm_2_scaffold_2381_20
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16227..16694
DNA (468bp) protein (156aa)
Tax=BJP_S1_SUB10_Methylophilales_55_32
13_1_40cm_2_scaffold_2381_21
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

16691..17377
DNA (687bp) protein (229aa)
Putative two-component histidine kinase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1B6_CALAS
histidine kinase Tax=RBG_16_Chloroflexi_63_12_curated
putative two-component histidine kinase
13_1_40cm_2_scaffold_2381_22
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

17388..17975
DNA (588bp) protein (196aa)
Putative two-component response regulator n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1B7_CALAS
two component LuxR family transcriptional regulator Tax=RBG_16_Chloroflexi_63_12_curated
putative two-component response regulator
13_1_40cm_2_scaffold_2381_23
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18175..18630
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Arthrobacter sp. 162MFSha1.1 RepID=UPI0003806F39
ycdZ; inner membrane protein ycdZ
Tax=BJP_S1_SUB10_Methylophilales_55_32
13_1_40cm_2_scaffold_2381_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18707..20044)
DNA (1338bp) protein (446aa)
General substrate transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ97_NITHX
major facilitator superfamily protein
General substrate transporter {ECO:0000313|EMBL:ABE61600.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter ham
Displaying 24 items

View Taxonomy