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13_1_40cm_2_scaffold_2723

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2723_1
unknown

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comp(1..120)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_2_scaffold_2723_2
unknown

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442..771
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_2_scaffold_2723_trna_1
unknown

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comp(1242..1315)
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_2723_3
unknown

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1485..2714
DNA (1230bp) protein (410aa)

This feature has no annotations

13_1_40cm_2_scaffold_2723_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2733..3044)
DNA (312bp) protein (104aa)
MerR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, MerR family id=4853974 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MerR family transcriptional regulator
13_1_40cm_2_scaffold_2723_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3086..3370)
DNA (285bp) protein (95aa)
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integration host factor subunit alpha
13_1_40cm_2_scaffold_2723_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3396..4394)
DNA (999bp) protein (333aa)
uncharacterized LOC100215998 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Blr0521 protein id=4853972 bin=GWA2_Methylomirabilis_73_35 species=Tropheryma whipplei genus=Tropheryma taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sporulation related domain protein
13_1_40cm_2_scaffold_2723_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4391..5278)
DNA (888bp) protein (296aa)
Uncharacterized protein id=4853971 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_2723_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5278..6633)
DNA (1356bp) protein (452aa)
GTPase Der id=4853970 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
small GTP-binding protein domain-containing protein; K03977 GTP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
small GTP-binding protein domain-containing protein
13_1_40cm_2_scaffold_2723_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6638..7969)
DNA (1332bp) protein (444aa)
Putative uncharacterized protein id=4853969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PDZ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron-sulfur cluster-binding oxidoreductase, cyano_FeS_chp family
13_1_40cm_2_scaffold_2723_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7944..8516)
DNA (573bp) protein (191aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=4853968 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_2723_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8536..9819)
DNA (1284bp) protein (428aa)
GTP-binding protein HflX; K03665 GTP-binding protein HflX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTPase HflX id=4853967 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTP-binding protein HflX
13_1_40cm_2_scaffold_2723_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9816..10754)
DNA (939bp) protein (313aa)
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=GWA2_Rokubacteria_73_35_curated
tRNA dimethylallyltransferase id=4853966 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
miaA-1; tRNA delta(2)-isopentenylpyrophosphate transferase
13_1_40cm_2_scaffold_2723_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10769..12463)
DNA (1695bp) protein (565aa)
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL Tax=GWA2_Rokubacteria_73_35_curated
DNA mismatch repair protein MutL id=4555220 bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mutL; DNA mismatch repair protein
13_1_40cm_2_scaffold_2723_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12582..14327)
DNA (1746bp) protein (582aa)
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutS id=4430853 bin=GWC2_Methylomirabilis_70_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA mismatch repair protein MutS
13_1_40cm_2_scaffold_2723_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14324..15037)
DNA (714bp) protein (238aa)
DNA mismatch repair protein MutS id=3360716 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=GWA2_Rokubacteria_73_35_curated
mutS; DNA mismatch repair protein MutS
13_1_40cm_2_scaffold_2723_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15057..15539)
DNA (483bp) protein (161aa)
histidine triad (HIT) protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=3360718 bin=GWA2_Methylomirabilis_73_35 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein
13_1_40cm_2_scaffold_2723_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15556..15831)
DNA (276bp) protein (92aa)
hupA1; DNA-binding protein HU 1; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, beta subunit, putative id=3360720 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histone family protein DNA-binding protein
13_1_40cm_2_scaffold_2723_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15912..16808)
DNA (897bp) protein (299aa)
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26) Tax=GWA2_Rokubacteria_73_35_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-)
Peptidase S49, putative signal peptide peptidase SppA id=4941224 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_2723_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(16817..17911)
DNA (1095bp) protein (365aa)
rpsA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S1 id=4941223 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsA; 30S ribosomal protein S1
13_1_40cm_2_scaffold_2723_20
Mycobacterium tuberculosis, Mycobacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

17997..18566
DNA (570bp) protein (190aa)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Mycobacterium tuberculosis RGTB423 RepID=H8HZI9_MYCTU
polyribonucleotide nucleotidyltransferase
Polyribonucleotide nucleotidyltransferase; TaxID=1091501 species="Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis RGTB423.;"
Displaying 21 items

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