ggKbase home page

13_1_40cm_2_scaffold_2925

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2925_1
unknown

Not on your lists

3..125
DNA (123bp) protein (41aa)

This feature has no annotations

13_1_40cm_2_scaffold_2925_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

191..1969
DNA (1779bp) protein (593aa)
Probable translation initiation factor IF-2 n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ED57_PYRF1
translation initiation factor IF-2; K03243 translation initiation factor 5B Tax=RBG_13_Bathyarchaeota_38_9_curated
translation initiation factor aIF-2
13_1_40cm_2_scaffold_2925_3
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists


2716..3093
DNA (378bp) protein (126aa)
30S ribosomal protein S6e n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=RS6E_UNCMA
RPS6A; 30S ribosomal protein S6; K02991 small subunit ribosomal protein S6e Tax=RBG_16_Bathyarchaeota_48_13_curated
rps6e; 30S ribosomal protein S6e
13_1_40cm_2_scaffold_2925_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


3090..3617
DNA (528bp) protein (176aa)
30S ribosomal protein S24e n=1 Tax=Fervidicoccus fontis (strain DSM 19380 / VKM B-2539 / Kam940) RepID=I0A2W6_FERFK
30S ribosomal protein S24e; K02974 small subunit ribosomal protein S24e Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S24
13_1_40cm_2_scaffold_2925_5
unknown

Not on your lists

comp(4069..4359)
DNA (291bp) protein (97aa)

This feature has no annotations

13_1_40cm_2_scaffold_2925_6
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

5300..5866
DNA (567bp) protein (189aa)
putative N-acetyltransferase id=1245772 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
putative N-acetyltransferase Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
hypothetical protein
13_1_40cm_2_scaffold_2925_7
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

5957..6355
DNA (399bp) protein (133aa)
PKD domain containing protein {ECO:0000313|EMBL:ABW35067.1}; TaxID=319795 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus geotherm
13_1_40cm_2_scaffold_2925_8
unknown

Not on your lists

6797..7288
DNA (492bp) protein (164aa)

This feature has no annotations

13_1_40cm_2_scaffold_2925_9
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7472..8308
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00037F89FF
Uncharacterized protein {ECO:0000313|EMBL:KDN21726.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
luciferase-like monooxygenase
13_1_40cm_2_scaffold_2925_10
Rhodococcus rhodnii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8363..9394)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Rhodococcus rhodnii LMG 5362 RepID=R7WLH7_9NOCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOM76158.1}; TaxID=1273125 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodnii LMG 5362.;"
13_1_40cm_2_scaffold_2925_11

Not on your lists

comp(9366..9830)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Atribacteria bacterium JGI 0000059-I14 RepID=UPI000379F126
Marine sediment metagenome DNA, contig: S01H1_S23285 {ECO:0000313|EMBL:GAG18278.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
capsular polyglutamate biosynthesis
13_1_40cm_2_scaffold_2925_12
Halobacillus sp. BAB-2008, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9831..11204)
DNA (1374bp) protein (458aa)
PGA synthase CapB n=1 Tax=Halobacillus sp. BAB-2008 RepID=L5N730_9BACI
PGA synthase CapB {ECO:0000313|EMBL:ELK46407.1}; TaxID=1246484 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Halobacillus.;" source="Halobacillus sp. BAB-2008.;"
capB; capsule biosynthesis protein CapB
13_1_40cm_2_scaffold_2925_13
unknown

Not on your lists

comp(11206..12150)
DNA (945bp) protein (315aa)

This feature has no annotations

13_1_40cm_2_scaffold_2925_14
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12678..13478
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Streptomyces prunicolor RepID=UPI0003754F3D
GNAT family acetyltransferase {ECO:0000313|EMBL:KKC27856.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
hypothetical protein
13_1_40cm_2_scaffold_2925_15
unknown

Not on your lists

13598..13828
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_2_scaffold_2925_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(13853..14275)
DNA (423bp) protein (141aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RBG_16_Euryarchaeota_68_12_curated
Thioesterase superfamily protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CQA0_9EURY
thioesterase
13_1_40cm_2_scaffold_2925_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(14297..15346)
DNA (1050bp) protein (350aa)
glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RBG_13_Bathyarchaeota_38_9_curated
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=3 Tax=Pyrococcus furiosus RepID=SYE_PYRFU
13_1_40cm_2_scaffold_2925_18
unknown

Not on your lists

comp(15921..16088)
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_2_scaffold_2925_19
Methanoregula boonei, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16391..16777
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7IAR6_METB6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS56827.1}; TaxID=456442 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula boon
13_1_40cm_2_scaffold_2925_20
unknown

Not on your lists

comp(16844..17503)
DNA (660bp) protein (220aa)

This feature has no annotations

13_1_40cm_2_scaffold_2925_21
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

17797..18465
DNA (669bp) protein (223aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U8G7_9CHLR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EFH80178.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonoba
short-chain dehydrogenase/reductase SDR
Displaying 21 items

View Taxonomy