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13_1_40cm_2_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3_1
unknown

Not on your lists

comp(476..634)
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_2
Clostridium sp. CAG:245, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

828..1181
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:245 RepID=R6BII4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA58921.1}; TaxID=1262784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein
13_1_40cm_2_scaffold_3_3

Not on your lists

1326..2519
DNA (1194bp) protein (398aa)
Acyl-CoA dehydrogenase (ACADM, acd) {ECO:0000313|EMBL:AIF00349.1}; EC=1.3.8.7 {ECO:0000313|EMBL:AIF00349.1};; TaxID=1456000 species="Archaea; Thaumarchaeota; environmental samples.;" source="unculture
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00036C819F
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_2_scaffold_3_4
unknown

Not on your lists

comp(2668..3102)
DNA (435bp) protein (145aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_5
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3395..3757
DNA (363bp) protein (121aa)
Uncharacterized protein {ECO:0000313|EMBL:KFA90896.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
13_1_40cm_2_scaffold_3_6
unknown

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comp(3888..4133)
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_7
Methanolacinia petrolearia, Methanolacinia, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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4412..4765
DNA (354bp) protein (118aa)
Transcriptional regulator, HxlR family n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RGJ2_METP4
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ADN35203.1}; TaxID=679926 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanolacinia.;" source="
13_1_40cm_2_scaffold_3_8
unknown

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comp(4762..5169)
DNA (408bp) protein (136aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_9

Not on your lists

comp(5420..6943)
DNA (1524bp) protein (508aa)
putative formiminotransferase-cyclodeaminase (EC:2.1.2.5 4.3.1.4)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LHA9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EQB63668.1}; TaxID=1379698 species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
13_1_40cm_2_scaffold_3_10
unknown

Not on your lists

comp(7073..7375)
DNA (303bp) protein (101aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_11
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(7568..7930)
DNA (363bp) protein (121aa)
Nascent polypeptide-associated complex protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HDX7_METFS
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
nac; nascent polypeptide-associated complex protein
13_1_40cm_2_scaffold_3_12
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(7976..8455)
DNA (480bp) protein (160aa)
PUA domain containing protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RGA6_ARCPA
PUA domain containing protein
PUA domain containing protein {ECO:0000313|EMBL:ADB57331.1}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus profu
13_1_40cm_2_scaffold_3_13
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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8597..9106
DNA (510bp) protein (170aa)
XRE family transcriptional regulator n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RA04_METFO
transcriptional regulator, xre family; K03627 putative transcription factor Tax=RBG_13_Bathyarchaeota_38_9_curated
XRE family transcriptional regulator
13_1_40cm_2_scaffold_3_14
unknown

Not on your lists

comp(9350..9646)
DNA (297bp) protein (99aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(9693..10256)
DNA (564bp) protein (188aa)
hypothetical protein; K07254 tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] Tax=RBG_16_Archaea_50_20_curated
tRNA (cytidine(56)-2'-O)-methyltransferase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GX36_METFV
hypothetical protein
13_1_40cm_2_scaffold_3_16
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

10331..10858
DNA (528bp) protein (176aa)
Transcription factor E n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T9K2_9ARCH
transcription factor Tax=RBG_13_Bathyarchaeota_38_9_curated
transcription factor
13_1_40cm_2_scaffold_3_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

10883..11704
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JDD6_THEKO
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_2_scaffold_3_18
Pyrobaculum calidifontis, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(12057..13256)
DNA (1200bp) protein (400aa)
Formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase {ECO:0000313|EMBL:ABO07643.1}; EC=2.8.3.16 {ECO:0000313|EMBL:ABO07643.1};; TaxID=410359 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobac
Formyl-CoA transferase n=1 Tax=Pyrobaculum calidifontis (strain JCM 11548 / VA1) RepID=A3MSM6_PYRCJ
13_1_40cm_2_scaffold_3_19
unknown

Not on your lists

13319..13879
DNA (561bp) protein (187aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_20
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

13893..14225
DNA (333bp) protein (111aa)
hypothetical protein; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RBG_13_Bathyarchaeota_52_12_curated
Bacterial lipoate protein ligase C-terminus n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BWS9_ANAMD
Bacterial lipoate protein ligase C-terminus
13_1_40cm_2_scaffold_3_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

14285..15001
DNA (717bp) protein (239aa)
Biotin/lipoate A/B protein ligase family protein; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RBG_13_Bathyarchaeota_38_9_curated
Lipoate-protein ligase A n=1 Tax=uncultured Acidilobus sp. CIS RepID=V4JWC4_9CREN
Biotin/lipoate A/B protein ligase family protein
13_1_40cm_2_scaffold_3_22
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

Not on your lists

15517..15852
DNA (336bp) protein (112aa)
Transcriptional regulator, AsnC family n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IAG3_ACIB4
transcriptional regulator, AsnC family
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EDY37045.1}; TaxID=439481 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum boonei (strain DSM 19572 / T469).;"
13_1_40cm_2_scaffold_3_23
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

15854..16273
DNA (420bp) protein (140aa)
Transcriptional regulator, AsnC family n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BF61_9EURY
AsnC family transcriptional regulator; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA Tax=RBG_13_Bathyarchaeota_46_16b_curated
transcriptional regulator, AsnC family
13_1_40cm_2_scaffold_3_24

Not on your lists

16363..16539
DNA (177bp) protein (59aa)
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:AIF05268.1}; TaxID=1456064 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_181_D10.;"
13_1_40cm_2_scaffold_3_25
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

16804..17772
DNA (969bp) protein (323aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus A
quinolinate synthetase (EC:2.5.1.72)
Quinolinate synthase A n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVP4_9BACT
13_1_40cm_2_scaffold_3_26
unknown

Not on your lists

comp(17822..18664)
DNA (843bp) protein (281aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_27
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18661..19542)
DNA (882bp) protein (294aa)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000
Nicotinate-nucleotide pyrophosphorylase [carboxylating] n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GL82_METTF
nadC; nicotinate-nucleotide pyrophosphorylase NadC
13_1_40cm_2_scaffold_3_28
unknown

Not on your lists

19600..20376
DNA (777bp) protein (259aa)

This feature has no annotations

13_1_40cm_2_scaffold_3_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(20560..20997)
DNA (438bp) protein (146aa)
methylmalonyl-CoA mutase, small subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, small subunit {ECO:0000313|EMBL:AFU59422.1}; EC=5.4.99.2 {ECO:0000313|EMBL:AFU59422.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; N
Methylmalonyl-CoA mutase, small subunit n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILC3_NITGG
13_1_40cm_2_scaffold_3_30
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

21213..22250
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1D9D7_9ZZZZ
nitrogenase subunit NifH (ATPase)-like protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
Displaying items 1-30 of 95 in total

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