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13_1_40cm_2_scaffold_3487

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3487_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


2..205
DNA (204bp) protein (68aa)
30S ribosomal protein S17 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_3487_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


202..570
DNA (369bp) protein (123aa)
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
50S ribosomal protein L14 id=4362127 bin=GWC2_Chloroflexi_73_18 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
50S ribosomal protein L14
13_1_40cm_2_scaffold_3487_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


573..914
DNA (342bp) protein (114aa)
50S ribosomal protein L24 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RL24_CARHZ
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rplX; 50S ribosomal protein L24
13_1_40cm_2_scaffold_3487_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


914..1462
DNA (549bp) protein (183aa)
50S ribosomal protein L5 n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RL5_SYMTH
rplE; 50S ribosomal protein L5 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rplE; 50S ribosomal protein L5
13_1_40cm_2_scaffold_3487_5
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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1473..1658
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THD1_9CHLR
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae;
rpsN; 30S ribosomal protein S14
13_1_40cm_2_scaffold_3487_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


1663..2160
DNA (498bp) protein (166aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S8 id=4362160 bin=GWC2_Chloroflexi_73_18 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
SSU ribosomal protein S8P
13_1_40cm_2_scaffold_3487_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


2168..2722
DNA (555bp) protein (185aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 id=14629535 bin=bin8_Chloro species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
rplF; 50S ribosomal protein L6
13_1_40cm_2_scaffold_3487_8
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2726..3079
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKY4_THEM7
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source
13_1_40cm_2_scaffold_3487_9
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


3123..3632
DNA (510bp) protein (170aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=14629533 bin=bin8_Chloro species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
30S ribosomal protein S5
13_1_40cm_2_scaffold_3487_10
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists


3629..3829
DNA (201bp) protein (67aa)
50S ribosomal protein L30 n=1 Tax=Prevotella marshii DSM 16973 RepID=E0NVF7_9BACT
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=RBG_16_Chloroflexi_68_14_curated
rpmD; 50S ribosomal protein L30
13_1_40cm_2_scaffold_3487_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


3829..4275
DNA (447bp) protein (149aa)
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
50S ribosomal protein L15 id=4362167 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
50S ribosomal protein L15
13_1_40cm_2_scaffold_3487_12
unknown

Not on your lists

comp(4262..4585)
DNA (324bp) protein (108aa)

This feature has no annotations

13_1_40cm_2_scaffold_3487_13
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(4643..4825)
DNA (183bp) protein (61aa)
Tax=RBG_16_RIF_CHLX_69_14_curated
13_1_40cm_2_scaffold_3487_14
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4853..5131)
DNA (279bp) protein (93aa)
Tax=RBG_16_Actinobacteria_68_12_curated
13_1_40cm_2_scaffold_3487_15
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

5275..5475
DNA (201bp) protein (67aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
preprotein translocase, SecY subunit; K03076 preprotein translocase subunit SecY id=84665 bin=ACD56 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
preprotein translocase subunit SecY
13_1_40cm_2_scaffold_3487_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

5503..6126
DNA (624bp) protein (208aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI000381ABF8
adenylate kinase
13_1_40cm_2_scaffold_3487_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6123..6902
DNA (780bp) protein (260aa)
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
methionine aminopeptidase n=1 Tax=Alicyclobacillus pohliae RepID=UPI00037DAA45
methionine aminopeptidase
13_1_40cm_2_scaffold_3487_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6999..7232
DNA (234bp) protein (78aa)
Translation initiation factor IF-1 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CWN3_9CLOT
Translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
translation initiation factor IF-1
13_1_40cm_2_scaffold_3487_19
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

7290..7403
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=6 Tax=Chroococcales RepID=RL36_SYNPX
rpmJ, rpl36; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpmJ; 50S ribosomal protein L36
13_1_40cm_2_scaffold_3487_20
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


7411..7794
DNA (384bp) protein (128aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=14629525 bin=bin8_Chloro species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
30S ribosomal protein S13
13_1_40cm_2_scaffold_3487_21
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


7794..8309
DNA (516bp) protein (172aa)
30S ribosomal protein S11 n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=RS11_HERA2
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S11
13_1_40cm_2_scaffold_3487_22
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

8908..9987
DNA (1080bp) protein (360aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4362194 bin=GWC2_Chloroflexi_73_18 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_2_scaffold_3487_23
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


9987..10544
DNA (558bp) protein (186aa)
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rplQ; putative 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 id=14629521 bin=bin8_Chloro species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
rplQ; 50S ribosomal protein L17
13_1_40cm_2_scaffold_3487_24
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

10567..11316
DNA (750bp) protein (250aa)
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
tRNA pseudouridine synthase A n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C033_DESTA
pseudouridylate synthase I
13_1_40cm_2_scaffold_3487_25
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


11309..11791
DNA (483bp) protein (161aa)
50S ribosomal protein L13 n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M303_ACIFD
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
50S ribosomal protein L13
13_1_40cm_2_scaffold_3487_26
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


11788..12183
DNA (396bp) protein (132aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=14629518 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin8_Chloro organism_group=Chloroflexi
30S ribosomal protein S9
13_1_40cm_2_scaffold_3487_27
unknown

Not on your lists

12218..13198
DNA (981bp) protein (327aa)

This feature has no annotations

13_1_40cm_2_scaffold_3487_28
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

13199..14029
DNA (831bp) protein (277aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative uncharacterized protein id=4424657 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
13_1_40cm_2_scaffold_3487_29
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

14032..15300
DNA (1269bp) protein (423aa)
YbbR family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQR3_9FIRM id=86165 bin=ACD58 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_2_scaffold_3487_30
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

15304..16740
DNA (1437bp) protein (479aa)
glmM; phosphoglucosamine mutase; K03431 phosphoglucosamine mutase [EC:5.4.2.10] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WS91_KYRT2
Displaying items 1-30 of 31 in total

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