ggKbase home page

13_1_40cm_2_scaffold_3490

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3490_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2..394
DNA (393bp) protein (131aa)
Ankyrin repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPT9_SINAD
ankyrin repeat-containing protein
Ankyrin repeat-containing protein {ECO:0000313|EMBL:AGA30701.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulis
13_1_40cm_2_scaffold_3490_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

391..2307
DNA (1917bp) protein (639aa)
putative ABC transporter ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Putative ABC transporter ATP-binding/permease protein id=5009185 bin=GWA2_Ignavibacteria_55_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome rbh
ABC transporter transmembrane region
13_1_40cm_2_scaffold_3490_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

2597..4894
DNA (2298bp) protein (766aa)
ABC transporter transmembrane region n=1 Tax=Bacteriovorax sp. DB6_IX RepID=T0RX90_9DELT rbh
ABC transporter transmembrane region {ECO:0000313|EMBL:AHG92935.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ABC transporter transmembrane region
13_1_40cm_2_scaffold_3490_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

4960..5478
DNA (519bp) protein (173aa)
protein of unknown function DUF1854
Uncharacterized protein {ECO:0000313|EMBL:AHG92934.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Uncharacterized protein id=3896432 bin=GWF2_Lentisphaerae_52_8 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
13_1_40cm_2_scaffold_3490_5
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5578..6915)
DNA (1338bp) protein (446aa)
BNR/Asp-box repeat protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F5I1_ACIC5 rbh
BNR/Asp-box repeat-containing protein
BNR/Asp-box repeat protein {ECO:0000313|EMBL:ACO32935.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strai
13_1_40cm_2_scaffold_3490_6
R_PER_ii_51_9, PER-ii, Bacteria

Not on your lists

comp(6986..8584)
DNA (1599bp) protein (533aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B34E6B
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_PER_ii_51_9_curated
hypothetical protein
13_1_40cm_2_scaffold_3490_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

8604..9197
DNA (594bp) protein (198aa)
Acetyltransferase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U372_MYXSD
N-acetyltransferase GCN5 Tax=RBG_16_Gemmatimonadetes_66_8_curated
acetyltransferase
13_1_40cm_2_scaffold_3490_8
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

9206..9811
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036CEE32
glutamine amidotransferase of anthranilate synthase
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
13_1_40cm_2_scaffold_3490_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

9893..10627
DNA (735bp) protein (245aa)
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=KDSB_GEMAT
13_1_40cm_2_scaffold_3490_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

10624..12297
DNA (1674bp) protein (558aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
CTP synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V6_GEMAT
CTP synthase
13_1_40cm_2_scaffold_3490_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

12300..13112
DNA (813bp) protein (271aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=GWC2_Gemmatimonadetes_71_10_curated
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V5_GEMAT
13_1_40cm_2_scaffold_3490_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

13238..13816
DNA (579bp) protein (193aa)
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45); K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=GWC2_Gemmatimonadetes_71_1
hypothetical protein n=1 Tax=Selenomonas bovis RepID=UPI000379B5FB
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
13_1_40cm_2_scaffold_3490_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

13785..14759
DNA (975bp) protein (325aa)
kdsD; arabinose 5-phosphate isomerase (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=GWC2_Gemmatimonadetes_71_10_curated
Arabinose 5-phosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V3_GEMAT
KpsF/GutQ family protein
13_1_40cm_2_scaffold_3490_14
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

14756..15376
DNA (621bp) protein (207aa)
protein of unknown function DUF1239
hypothetical protein Tax=RBG_16_Acidobacteria_68_9_curated
13_1_40cm_2_scaffold_3490_15
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

15379..16815
DNA (1437bp) protein (479aa)
Marine sediment metagenome DNA, contig: S01H1_S04962 Tax=RBG_16_Acidobacteria_68_9_curated
13_1_40cm_2_scaffold_3490_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

16812..18014
DNA (1203bp) protein (401aa)
putative ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V0_GEMAT
ABC transporter related protein
13_1_40cm_2_scaffold_3490_17
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

18011..19468
DNA (1458bp) protein (486aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U9_GEMAT rbh
rpoN; RNA polymerase sigma factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_16_Acidobacteria_68_9_curated
RNA polymerase sigma-54 factor, RpoN
13_1_40cm_2_scaffold_3490_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19465..20427
DNA (963bp) protein (321aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U8_GEMAT
glycosyl transferase family 2
13_1_40cm_2_scaffold_3490_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

20440..21645
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000362410A
surface antigen gene Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative cell surface protein
13_1_40cm_2_scaffold_3490_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

21694..22233
DNA (540bp) protein (180aa)
glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
glycosyltransferase (EC:2.4.-.-)
Glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U7_GEMAT
Displaying 20 items

View Taxonomy