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13_1_40cm_2_scaffold_3655

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3655_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3..122
DNA (120bp) protein (40aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
13_1_40cm_2_scaffold_3655_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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122..913
DNA (792bp) protein (264aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F4Q9_DESDL
13_1_40cm_2_scaffold_3655_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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997..1218
DNA (222bp) protein (74aa)
translation initiation factor IF-1 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B76C4B
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes
translation initiation factor IF-1
13_1_40cm_2_scaffold_3655_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1435..1818
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RS13_SOLUE
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsM; 30S ribosomal protein S13
13_1_40cm_2_scaffold_3655_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


1821..2204
DNA (384bp) protein (128aa)
30S ribosomal protein S11 n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000367E825
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsK; 30S ribosomal protein S11
13_1_40cm_2_scaffold_3655_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


2424..3062
DNA (639bp) protein (213aa)
30S ribosomal protein S4 n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=RS4_MOOTA
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsD; 30S ribosomal protein S4
13_1_40cm_2_scaffold_3655_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3179..4204
DNA (1026bp) protein (342aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035CB6C5
13_1_40cm_2_scaffold_3655_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


4274..4801
DNA (528bp) protein (176aa)
50S ribosomal protein L17 n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EJT4_CORAD
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomon
50S ribosomal protein L17
13_1_40cm_2_scaffold_3655_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

4942..5571
DNA (630bp) protein (210aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WXH6_ALIAD
Biotin carboxyl carrier protein {ECO:0000313|EMBL:CDM66142.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein
13_1_40cm_2_scaffold_3655_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5653..6339
DNA (687bp) protein (229aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:CDM66143.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CDM66143.1};; EC=6.4.1.2 {ECO:0000313|EMBL:CDM66143.1};; TaxID=454194 species="Bacteria;
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILG2_KORVE
acetyl-CoA carboxylase, biotin carboxylase
13_1_40cm_2_scaffold_3655_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6409..7062
DNA (654bp) protein (218aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:CDM66143.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CDM66143.1};; EC=6.4.1.2 {ECO:0000313|EMBL:CDM66143.1};; TaxID=454194 species="Bacteria;
Acetyl-CoA carboxylase, biotin carboxylase id=3932803 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
accC2; acetyl-CoA carboxylase, biotin carboxylase
13_1_40cm_2_scaffold_3655_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


7120..7428
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ACW8_THEID
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomon
50S ribosomal protein L21
13_1_40cm_2_scaffold_3655_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


7534..7806
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9R158_NOSS7
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L27
13_1_40cm_2_scaffold_3655_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8045..9115
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003665866
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" sour
obgE; GTPase ObgE
13_1_40cm_2_scaffold_3655_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9137..9796
DNA (660bp) protein (220aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244, ECO:0000256|SAAS:SAAS00086517};; Deamido-NAD(+) diphosphorylase {ECO
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE34_CHLTF
13_1_40cm_2_scaffold_3655_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9797..10369
DNA (573bp) protein (191aa)
Ribosomal silencing factor RsfS n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KAK2_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Iojap-related protein
13_1_40cm_2_scaffold_3655_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10380..11306
DNA (927bp) protein (309aa)
Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVS2_KORVE
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM66149.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomo
Fis family transcriptional regulator
13_1_40cm_2_scaffold_3655_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

11441..11884
DNA (444bp) protein (148aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00094203};; 23S rRNA (pseudouridine1915-N3)-methy
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] id=17250973 bin=RBG_16_Aminicenantes_66_30 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
rRNA large subunit m3Psi methyltransferase RlmH
13_1_40cm_2_scaffold_3655_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

11913..12281
DNA (369bp) protein (123aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ15_KORVE
Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:CDM66151.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphato
TraR/DksA family transcriptional regulator
13_1_40cm_2_scaffold_3655_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12490..13083
DNA (594bp) protein (198aa)
Amidophosphoribosyltransferase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KEA6_9SPHN
Predicted amidophosphoribosyltransferase {ECO:0000313|EMBL:CDM66152.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogen
phosphoribosyltransferase
13_1_40cm_2_scaffold_3655_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13429..13746
DNA (318bp) protein (106aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64568.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Displaying 21 items

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