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13_1_40cm_2_scaffold_377

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_377_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..1071)
DNA (1071bp) protein (357aa)
poly(R)-hydroxyalkanoic acid synthase subunit PhaC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
poly(R)-hydroxyalkanoic acid synthase subunit PhaC id=14626101 bin=bin7_NC10_sister species=Aneurinibacillus aneurinilyticus genus=Aneurinibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
13_1_40cm_2_scaffold_377_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1094..1414)
DNA (321bp) protein (107aa)
sterol-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative sterol carrier protein id=4320175 bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sterol-binding protein
13_1_40cm_2_scaffold_377_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1484..2233)
DNA (750bp) protein (250aa)
dehydrogenase/reductase 11 (EC:1.1.1.-); K00100 [EC:1.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable oxidoreductase (Short-chain dehydrogenase family) id=4117790 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_2_scaffold_377_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2235..3008)
DNA (774bp) protein (258aa)
enoyl-CoA hydratase/carnithine racemase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=1890904 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase/isomerase
13_1_40cm_2_scaffold_377_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2998..3585)
DNA (588bp) protein (196aa)
TetR family transcriptional regulator; K13770 TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, TetR family id=1890906 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_2_scaffold_377_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3663..4994)
DNA (1332bp) protein (444aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidohydrolase id=4800307 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase
13_1_40cm_2_scaffold_377_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5125..6759
DNA (1635bp) protein (545aa)
hypothetical protein; K06890 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine pyrophosphate enzyme id=2783151 bin=GWF2_Methylomirabilis_70_14 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
thiamine pyrophosphate enzyme
13_1_40cm_2_scaffold_377_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6770..7717
DNA (948bp) protein (316aa)
putative oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
putative F420-dependent oxidoreductase id=14626112 bin=bin7_NC10_sister species=Actinomadura madurae genus=Actinomadura taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
putative F420-dependent oxidoreductase, MSMEG_3544 family
13_1_40cm_2_scaffold_377_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(7757..8758)
DNA (1002bp) protein (334aa)
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] id=14626116 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10 rbh
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] Tax=CSP1_6_Rokubacteria
threonine dehydratase (EC:4.3.1.19)
13_1_40cm_2_scaffold_377_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8793..9755
DNA (963bp) protein (321aa)
putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] Tax=GWA2_Rokubacteria_73_35_curated
putative signal peptide peptidase SppA (EC:3.4.21.-)
Putative Signal peptide peptidase SppA id=3526411 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_377_11
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(9737..9931)
DNA (195bp) protein (65aa)
hypothetical protein id=24596142 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_2_scaffold_377_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9928..10503)
DNA (576bp) protein (192aa)
Coenzyme A pyrophosphatase id=1890929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
coenzyme A pyrophosphatase Tax=GWA2_Rokubacteria_73_35_curated
coenzyme A pyrophosphatase
13_1_40cm_2_scaffold_377_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10532..10723)
DNA (192bp) protein (64aa)
oxidoreductase (EC:1.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=1890936 bin=GWA2_Methylomirabilis_73_35 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_377_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10822..11316)
DNA (495bp) protein (165aa)
oxidoreductase (EC:1.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=1890936 bin=GWA2_Methylomirabilis_73_35 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_2_scaffold_377_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11356..12117)
DNA (762bp) protein (254aa)
sir2 family protein; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sat:SYN_01020 Sir2 family NAD-dependent deacetylase; K12410 NAD-dependent deacetylase [EC:3.5.1.-] id=1241516 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
sir2 family protein
13_1_40cm_2_scaffold_377_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12175..12966)
DNA (792bp) protein (264aa)
abortive infection protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Abortive infection protein id=1890947 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
abortive infection protein
13_1_40cm_2_scaffold_377_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12959..14386)
DNA (1428bp) protein (476aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWC2_Rokubacteria_70_16_curated
Amidase id=3014927 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
13_1_40cm_2_scaffold_377_18
unknown

Not on your lists

comp(14379..14531)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_2_scaffold_377_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14566..15393)
DNA (828bp) protein (276aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70)
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_377_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15495..16274
DNA (780bp) protein (260aa)
two-component hybrid histidine kinase (EC:2.7.3.-)
Putative PAS/PAC sensor protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQ40_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
13_1_40cm_2_scaffold_377_21
unknown

Not on your lists

16410..16610
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_2_scaffold_377_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16796..17212
DNA (417bp) protein (139aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4020045 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
chemotaxis protein CheY
Displaying 22 items

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