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13_1_40cm_2_scaffold_3904

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3904_1
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1..186)
DNA (186bp) protein (62aa)
isocitrate lyase n=1 Tax=Hymenobacter aerophilus RepID=UPI000364961E
isocitrate lyase
Isocitrate lyase {ECO:0000313|EMBL:AII52945.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
13_1_40cm_2_scaffold_3904_2
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(216..1805)
DNA (1590bp) protein (530aa)
malate synthase (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
malate synthase (EC:2.3.3.9)
Malate synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022L4_SOLUE
13_1_40cm_2_scaffold_3904_3
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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1840..2475
DNA (636bp) protein (212aa)
hypothetical protein Tax=RBG_16_Gamma2_60_9_curated
hypothetical protein id=24594421 bin=RBG_19FT_COMBO_GAL15_69_19 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_2_scaffold_3904_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2489..2635
DNA (147bp) protein (49aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_2_scaffold_3904_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2695..3225
DNA (531bp) protein (177aa)
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase sigma factor id=4427992 bin=GWC2_Ignavibacteria_56_12 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
13_1_40cm_2_scaffold_3904_6
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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3222..3824
DNA (603bp) protein (201aa)
hypothetical protein Tax=RBG_13_Acidobacteria_68_16_curated
13_1_40cm_2_scaffold_3904_7
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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3824..4729
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VU13_9GAMM
hypothetical protein Tax=RBG_13_Acidobacteria_68_16_curated
protein of unknown function DUF4098
13_1_40cm_2_scaffold_3904_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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4784..5020
DNA (237bp) protein (79aa)
glucose/sorbosone dehydrogenase
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:AHG90401.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein id=24580018 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Janthinobacterium lividum genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_2_scaffold_3904_9
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5127..5405
DNA (279bp) protein (93aa)
glucose dehydrogenase n=1 Tax=Janthinobacterium lividum RepID=UPI000287FBF4
Glucose dehydrogenase {ECO:0000313|EMBL:KHA77670.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacteriu
hypothetical protein
13_1_40cm_2_scaffold_3904_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5458..5967
DNA (510bp) protein (170aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93635.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_3904_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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6011..6775
DNA (765bp) protein (255aa)
oxidoreductase n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003698966
short-chain dehydrogenase/reductase SDR Tax=RBG_16_Gemmatimonadetes_66_8_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_2_scaffold_3904_12
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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6872..7324
DNA (453bp) protein (151aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH94812.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
13_1_40cm_2_scaffold_3904_13
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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7455..8114
DNA (660bp) protein (220aa)
Blue (Type 1) copper domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8A5_SPHTD
blue (type 1) copper domain-containing protein
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ACZ40048.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobact
13_1_40cm_2_scaffold_3904_14
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8260..8919
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM3_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40950.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_2_scaffold_3904_15
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8947..9252)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037D9FAF
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:GAN45066.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibact
twin-arginine translocation pathway signal protein
13_1_40cm_2_scaffold_3904_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(9206..11119)
DNA (1914bp) protein (638aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN80_SINAD id=5224646 bin=16ft_combo_ws3_JS1 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RBG_16_RIF_WS3X_71_46_curated
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_1_40cm_2_scaffold_3904_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11235..13376)
DNA (2142bp) protein (714aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN80_SINAD id=5224646 bin=16ft_combo_ws3_JS1 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RBG_16_RIF_WS3X_71_46_curated
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_1_40cm_2_scaffold_3904_18
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(13378..13833)
DNA (456bp) protein (152aa)
(2Fe-2S)-binding domain protein n=3 Tax=Anaeromyxobacter RepID=B4ULZ9_ANASK id=5224647 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
(2Fe-2S)-binding protein
13_1_40cm_2_scaffold_3904_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

14114..17356
DNA (3243bp) protein (1081aa)
TonB-dependent receptor plug n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJI8_RHOM4
TonB-dependent outer membrane protein, SusC/RagA
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG93779.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_3904_20
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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17371..18879
DNA (1509bp) protein (503aa)
RagB/SusD domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJI7_RHOM4
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACY48645.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" sourc
Displaying 20 items

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