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13_1_40cm_2_scaffold_3870

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3870_1
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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113..1915
DNA (1803bp) protein (601aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00037B4BF9
Hemolysin-type calcium-binding region {ECO:0000313|EMBL:EGK87235.1}; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus
hypothetical protein
13_1_40cm_2_scaffold_3870_2
unknown

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2218..3573
DNA (1356bp) protein (452aa)

This feature has no annotations

13_1_40cm_2_scaffold_3870_3
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3861..4760
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI000372247B
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
13_1_40cm_2_scaffold_3870_4
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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5071..6453
DNA (1383bp) protein (461aa)
DNA repair protein RadA (EC:2.1.1.63); K04485 DNA repair protein RadA/Sms Tax=RBG_16_Chloroflexi_64_32_curated
DNA repair protein radA n=3 Tax=Dehalococcoides mccartyi RepID=D3SKY4_DEHSG rbh
radA; DNA repair protein RadA
13_1_40cm_2_scaffold_3870_5
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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6530..6880
DNA (351bp) protein (117aa)
Tax=RBG_16_Chloroflexi_64_32_curated
13_1_40cm_2_scaffold_3870_6
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(6893..7711)
DNA (819bp) protein (273aa)
Amidohydrolase 2 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8U4_SPHTD
amidohydrolase 2; K07045 Tax=RBG_16_Chloroflexi_68_14_curated
amidohydrolase 2
13_1_40cm_2_scaffold_3870_7
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(7752..8864)
DNA (1113bp) protein (371aa)
Rod shape-determining protein RodA n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDH7_THET1 rbh
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RBG_16_Chloroflexi_64_32_curated
rod shape-determining protein RodA
13_1_40cm_2_scaffold_3870_8
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(8861..10771)
DNA (1911bp) protein (637aa)
hor:Hore_14210 peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2 id=96523 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
mrdA; penicillin-binding protein 2; K05515 penicillin-binding protein 2 Tax=RBG_16_Chloroflexi_64_32_curated
mrdA; penicillin-binding protein 2
13_1_40cm_2_scaffold_3870_9
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

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comp(10790..11251)
DNA (462bp) protein (154aa)
Rod shape-determining protein MreD n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5P2_SPHTD
rod shape-determining protein MreD
Tax=RBG_16_Acidobacteria_64_8_curated
13_1_40cm_2_scaffold_3870_10

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comp(11308..12267)
DNA (960bp) protein (320aa)
Cell shape-determining protein MreC n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCL9_THET1
Marine sediment metagenome DNA, contig: S01H1_S43302 {ECO:0000313|EMBL:GAG45247.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rod shape-determining protein MreC
13_1_40cm_2_scaffold_3870_11

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comp(12334..13314)
DNA (981bp) protein (327aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL68243.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Rod shape-determining protein MreB id=3311492 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
rod shape-determining protein MreB
13_1_40cm_2_scaffold_3870_12

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comp(13492..14100)
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL63513.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
WD40 domain protein beta Propeller id=3599062 bin=GWC2_Chloroflexi_73_18 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
nuclease
13_1_40cm_2_scaffold_3870_13
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(14090..16126)
DNA (2037bp) protein (679aa)
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RBG_16_Chloroflexi_68_14_curated
det:DET0596 ligA; DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] id=1242553 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi rbh
ligA; DNA ligase (EC:6.5.1.2)
13_1_40cm_2_scaffold_3870_14
unknown

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16277..17125
DNA (849bp) protein (283aa)

This feature has no annotations

13_1_40cm_2_scaffold_3870_15
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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17334..17831
DNA (498bp) protein (166aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] Tax=RBG_16_Chloroflexi_64_32_curated
GNAT family acetyltransferase n=1 Tax=Laceyella sacchari RepID=UPI0003B61C93
phosphinothricin acetyltransferase
13_1_40cm_2_scaffold_3870_16

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18172..18795
DNA (624bp) protein (208aa)
Glutamine amidotransferase n=1 Tax=uncultured prokaryote RepID=H5SPI9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKL10811.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
imidazole glycerol phosphate synthase glutamine amidotransferase subunit
13_1_40cm_2_scaffold_3870_17
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

18815..19546
DNA (732bp) protein (244aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] Tax=RBG
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=HIS4_CHLAD
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
13_1_40cm_2_scaffold_3870_18

Not on your lists

19632..20867
DNA (1236bp) protein (412aa)
acyl-CoA dehydrogenase n=1 Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B79029 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM26121.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
acyl-CoA dehydrogenase
13_1_40cm_2_scaffold_3870_19

Not on your lists

20886..21653
DNA (768bp) protein (256aa)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RB53_AMMDK
Uncharacterized protein {ECO:0000313|EMBL:KKM26119.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
imidazole glycerol phosphate synthase subunit HisF
13_1_40cm_2_scaffold_3870_20
unknown

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21682..21762
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 20 items

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