ggKbase home page

13_1_40cm_2_scaffold_505

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_505_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

288..791
DNA (504bp) protein (168aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88786.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_505_2
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1827..2012
DNA (186bp) protein (62aa)
DoxX family protein id=4586536 bin=GWC2_Pelobacter_58_13 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
DoxX family protein; K15977 putative oxidoreductase Tax=GWC2_Pelobacteraceae_58_13_curated
hypothetical protein
13_1_40cm_2_scaffold_505_3
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

2009..2593
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2Q3H4_9CAUL
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_1_40cm_2_scaffold_505_4
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2666..3103)
DNA (438bp) protein (146aa)
hypothetical protein Tax=RBG_13_Deltaproteobacteria_61_14_curated
hypothetical protein id=1250272 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
13_1_40cm_2_scaffold_505_5
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3502..4590)
DNA (1089bp) protein (363aa)
Putative amino acid aldolase or racemase id=4650281 bin=GWA2_Ignavibacteria_55_11 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
putative amino acid aldolase or racemase Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
putative serine dehydratase domain protein
13_1_40cm_2_scaffold_505_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4613..5968)
DNA (1356bp) protein (452aa)
Putative lipoprotein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MV42_CORCM
Xaa-Pro aminopeptidase family enzyme Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M24
13_1_40cm_2_scaffold_505_7
unknown

Not on your lists

comp(5965..7104)
DNA (1140bp) protein (380aa)
hypothetical protein
13_1_40cm_2_scaffold_505_8
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7104..7499)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1AE41_9ZZZZ
hypothetical protein; K08972 putative membrane protein Tax=RBG_16_Gamma2_64_11_curated
hypothetical protein
13_1_40cm_2_scaffold_505_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7496..7981)
DNA (486bp) protein (162aa)
hypothetical protein Tax=RBG_16_Acidobacteria_70_10_curated
hypothetical protein id=14626251 bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
metal-dependent hydrolase
13_1_40cm_2_scaffold_505_10
unknown

Not on your lists

comp(8058..8447)
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_2_scaffold_505_11
unknown

Not on your lists

comp(8627..8857)
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_2_scaffold_505_12
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8900..9742
DNA (843bp) protein (281aa)
Cyclase family protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SK67_RHOMR
cyclase family protein
Cyclase family protein {ECO:0000313|EMBL:AEN72823.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marin
13_1_40cm_2_scaffold_505_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9769..11061)
DNA (1293bp) protein (431aa)
Aminotransferase, class V n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021G6_SOLUE
class V aminotransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
aminotransferase class V
13_1_40cm_2_scaffold_505_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11066..11434)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RIC5_ACCPU
h16_A3595; hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_2_scaffold_505_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11515..12663)
DNA (1149bp) protein (383aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_2_scaffold_505_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12789..13847)
DNA (1059bp) protein (353aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.8.1.-); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G2_GEMAT
tRNA-specific 2-thiouridylase mnmA
13_1_40cm_2_scaffold_505_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13844..15025)
DNA (1182bp) protein (394aa)
Aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G3_GEMAT
aminotransferase class V
Aminotransferase class V {ECO:0000313|EMBL:AHG90429.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_505_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15044..15766)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G7_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_2_scaffold_505_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15912..18350)
DNA (2439bp) protein (813aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7H4_GEMAT
hypothetical membrane protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
MacB-like periplasmic core domain protein
13_1_40cm_2_scaffold_505_20
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18496..19632)
DNA (1137bp) protein (379aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7H6_GEMAT
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH38186.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (str
13_1_40cm_2_scaffold_505_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

19746..20108
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Uncharacterized protein id=24515461 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Displaying 21 items

View Taxonomy