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13_1_40cm_2_scaffold_5060

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_5060_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

2..481
DNA (480bp) protein (160aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_5060_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

500..1039
DNA (540bp) protein (180aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_5060_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1036..1458)
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0GLV1_9SPHN
putative CoA-binding protein; K06929 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
putative CoA-binding protein
13_1_40cm_2_scaffold_5060_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

1527..2009
DNA (483bp) protein (161aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_5060_trna_1
unknown

Not on your lists

2116..2188
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_5060_5
unknown

Not on your lists

comp(2519..2731)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_2_scaffold_5060_6
unknown

Not on your lists

2944..3072
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_2_scaffold_5060_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3077..5278)
DNA (2202bp) protein (734aa)
PT repeat-containing protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3R4_SPHTD
PT repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PT repeat-containing protein
13_1_40cm_2_scaffold_5060_8
Dietzia cinnamea, Dietzia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5545..6225
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Dietzia cinnamea P4 RepID=E6JAT4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFV91331.1}; TaxID=910954 species="Bacteria; Actinobacteria; Corynebacteriales; Dietziaceae; Dietzia.;" source="Dietzia cinnamea P4.;"
adenylate kinase-like kinase
13_1_40cm_2_scaffold_5060_9
unknown

Not on your lists

6520..7149
DNA (630bp) protein (210aa)

This feature has no annotations

13_1_40cm_2_scaffold_5060_10
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

7198..8403
DNA (1206bp) protein (402aa)
serine--glyoxylate aminotransferase (EC:2.6.1.45); K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] id=24401591 bin=RBG_19FT_COMBO_GAL15_69_19 species=Amycolatopsis nigrescens genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
serine--glyoxylate transaminase (EC:2.6.1.45); K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] Tax=RBG_19FT_COMBO
serine--glyoxylate aminotransferase (EC:2.6.1.45)
13_1_40cm_2_scaffold_5060_11
unknown

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8375..8779
DNA (405bp) protein (135aa)

This feature has no annotations

13_1_40cm_2_scaffold_5060_12
unknown

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9171..9662
DNA (492bp) protein (164aa)

This feature has no annotations

13_1_40cm_2_scaffold_5060_13
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9669..10604)
DNA (936bp) protein (312aa)
bcpA; carboxyvinyl-carboxyphosphonate phosphorylmutase (EC:2.7.8.23)
Carboxyvinyl-carboxyphosphonate phosphorylmutase {ECO:0000313|EMBL:KJS46914.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacteri
prpB; 2-methylisocitrate lyase id=24599244 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_2_scaffold_5060_14
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10565..11065)
DNA (501bp) protein (167aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate is
3-isopropylmalate dehydratase small subunit (EC:4.2.1.35)
3-isopropylmalate dehydratase small subunit 1 (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) n=1 Tax=mine drainage metagenome RepID=E6PC53_9ZZZZ
13_1_40cm_2_scaffold_5060_15
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11062..12252)
DNA (1191bp) protein (397aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate is
3-isopropylmalate dehydratase large subunit n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2JKZ3_9BURK
3-isopropylmalate dehydratase large subunit
13_1_40cm_2_scaffold_5060_16
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(12255..12962)
DNA (708bp) protein (236aa)
putative amidohydrolase; K01466 allantoinase [EC:3.5.2.5] id=24599245 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Actinoplanes missouriensis genus=Actinoplanes taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative amidohydrolase; K01466 allantoinase [EC:3.5.2.5] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
dihydropyrimidinase (EC:3.5.2.2)
13_1_40cm_2_scaffold_5060_17
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13831..14952)
DNA (1122bp) protein (374aa)
Methyltransferase type 11 n=1 Tax=Micromonospora sp. (strain L5) RepID=E8S018_MICSL rbh
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61485.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micr
type 11 methyltransferase
13_1_40cm_2_scaffold_5060_18
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15001..15828)
DNA (828bp) protein (276aa)
Transcriptional regulator, IclR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZ38_RUBXD
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ABG03340.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;"
13_1_40cm_2_scaffold_5060_19
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(15789..17159)
DNA (1371bp) protein (457aa)
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases id=24599250 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
peptidase M20
13_1_40cm_2_scaffold_5060_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

17192..17638
DNA (447bp) protein (149aa)
hypothetical protein id=14625584 bin=bin7_NC10_sister species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
maoC; dehydrogenase
13_1_40cm_2_scaffold_5060_21
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17655..18170
DNA (516bp) protein (172aa)
MaoC-like dehydratase n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B051_STRRD
MaoC-like dehydratase
MaoC-like dehydratase {ECO:0000313|EMBL:ACZ89057.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (s
13_1_40cm_2_scaffold_5060_22
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18180..18515)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Xenorhabdus bovienii (strain SS-2004) RepID=D3V7T9_XENBS
Uncharacterized protein {ECO:0000313|EMBL:EYR67263.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici
hypothetical protein
13_1_40cm_2_scaffold_5060_23
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18637..19038
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WFJ9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EYR67263.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici
hypothetical protein
13_1_40cm_2_scaffold_5060_24
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

19220..20503
DNA (1284bp) protein (428aa)
Extracellular ligand-binding receptor n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPQ5_ROSCS
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABU59551.1}; Flags: Precursor;; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Rosei
13_1_40cm_2_scaffold_5060_25
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

20584..21471
DNA (888bp) protein (296aa)
Inner-membrane translocator n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPQ4_ROSCS rbh
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ABU59550.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus
13_1_40cm_2_scaffold_5060_26
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21468..23087
DNA (1620bp) protein (540aa)
ABC transporter related n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPQ3_ROSCS rbh
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABU59549.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus cas
Displaying 27 items

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