ggKbase home page

13_1_40cm_2_scaffold_5254

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_5254_1
unknown

Not on your lists

1..429
DNA (429bp) protein (143aa)

This feature has no annotations

13_1_40cm_2_scaffold_5254_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

608..2002
DNA (1395bp) protein (465aa)
Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WQ0_SOLUE
peptidase S1 and S6, chymotrypsin/Hap
Peptidase S1 and S6, chymotrypsin/Hap {ECO:0000313|EMBL:ABJ85915.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibac
13_1_40cm_2_scaffold_5254_3
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(2009..3691)
DNA (1683bp) protein (561aa)
ABC transporter related id=2786162 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae rbh
putative ABC transporter ATP-binding protein Tax=GWC2_Nitrospirae_42_7_curated
putative ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_5254_4
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3708..4151)
DNA (444bp) protein (148aa)
Anti-sigma factor antagonist n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CU4_SOLUE
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
anti-sigma-factor antagonist
13_1_40cm_2_scaffold_5254_5
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4164..5201)
DNA (1038bp) protein (346aa)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LTS1_HALO1
AAA ATPase
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:ACY15765.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae;
13_1_40cm_2_scaffold_5254_6
GWA2_OD1_45_30, Parcubacteria, Bacteria

Not on your lists

5239..5907
DNA (669bp) protein (223aa)
Glycerophosphodiester phosphodiesterase n=1 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7RD12_KANKD
Glycerophosphodiester phosphodiesterase Tax=GWA2_OD1_45_30
glycerophosphodiester phosphodiesterase
13_1_40cm_2_scaffold_5254_7
R_OD1_Wolfebacteria_41_13b, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

5900..6991
DNA (1092bp) protein (364aa)
putative dehydrogenase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_41_13b_curated
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000366F816
putative dehydrogenase
13_1_40cm_2_scaffold_5254_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6988..7338)
DNA (351bp) protein (117aa)
Anti-sigma factor antagonist n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V107_TERSS
anti-anti-sigma factor
anti-anti-sigma factor; K04749 anti-sigma B factor antagonist Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_2_scaffold_5254_9
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(7370..7942)
DNA (573bp) protein (191aa)
translation elongation factor P n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B4534E
translation elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;"
13_1_40cm_2_scaffold_5254_10
unknown

Not on your lists

8003..8191
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_2_scaffold_5254_11
unknown

Not on your lists

8209..8385
DNA (177bp) protein (59aa)

This feature has no annotations

13_1_40cm_2_scaffold_5254_12
RifOxyC12_full_RIF_OD1_09_46_25_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(8392..8559)
DNA (168bp) protein (56aa)
hypothetical protein Tax=RifOxyC12_full_RIF_OD1_09_46_25_curated
id=3285891 bin=GWC2_Methylomirabilis_70_24 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_2_scaffold_5254_13
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8651..8989)
DNA (339bp) protein (113aa)
Pentapeptide repeat-containing protein n=1 Tax=Pseudomonas viridiflava UASWS0038 RepID=K6CIM3_PSEVI
pentapeptide repeat-containing protein Tax=CG_Delta_03
pentapeptide repeat-containing protein
13_1_40cm_2_scaffold_5254_14
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

9097..10380
DNA (1284bp) protein (428aa)
twin-arginine translocation pathway signal protein (EC:3.1.6.4)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI000345AD60 rbh
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KIJ75162.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campyl
13_1_40cm_2_scaffold_5254_15
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10503..11282
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037B1DDF
hypothetical protein; K07090 Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
13_1_40cm_2_scaffold_5254_16
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11302..11994
DNA (693bp) protein (231aa)
cysH; phosphoadenosine phosphosulfate reductase (EC:1.8.4.8)
Probable cysH 5' adenylylsulfate aps reductase protein {ECO:0000313|EMBL:CAD84766.1}; EC=1.8.99.4 {ECO:0000313|EMBL:CAD84766.1};; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Ni
Probable cysH 5' adenylylsulfate aps reductase protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82W42_NITEU rbh
13_1_40cm_2_scaffold_5254_17
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11991..12890
DNA (900bp) protein (300aa)
Sulfate adenylyltransferase {ECO:0000256|SAAS:SAAS00055732}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055732};; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotricha
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4)
Sulfate adenylyltransferase, small subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CE95_9GAMM rbh
13_1_40cm_2_scaffold_5254_18
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12887..14134
DNA (1248bp) protein (416aa)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055979};; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales;
sulfate adenylyltransferase, large subunit (EC:2.7.7.4)
Sulfate adenylyltransferase, large subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CE96_9GAMM rbh
13_1_40cm_2_scaffold_5254_19
unknown

Not on your lists

14259..14474
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_2_scaffold_5254_20
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14781..16268
DNA (1488bp) protein (496aa)
hypothetical protein n=1 Tax=Mastigocladopsis repens RepID=UPI0002DD9DEF
sensor signal transduction histidine kinase Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PAS domain-containing protein
13_1_40cm_2_scaffold_5254_21
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

16255..16716
DNA (462bp) protein (154aa)
Response regulator receiver protein id=4337185 bin=GWC2_Ignavibacteria_56_12 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
signal transduction response regulator, receiver domain
13_1_40cm_2_scaffold_5254_22
unknown

Not on your lists

16723..16788
DNA (66bp) protein (22aa)

This feature has no annotations

Displaying 22 items

View Taxonomy