ggKbase home page

13_1_40cm_2_scaffold_7

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_7_1
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

Not on your lists

comp(7..1086)
DNA (1080bp) protein (360aa)
phosphoribosylglycinamide formyltransferase; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] Tax=RBG_16_Spirochaetes_49_21_curated
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000366C3E3
purH; IMP cyclohydrolase
13_1_40cm_2_scaffold_7_2
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

comp(1083..1688)
DNA (606bp) protein (202aa)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZEC0_9BACT
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae
phosphoribosylaminoimidazolecarboxamide formyltransferase
13_1_40cm_2_scaffold_7_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(1732..4299)
DNA (2568bp) protein (856aa)
Hypothetical membrane protein id=4051727 bin=GWF2_Firmicute_51_9 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWF2_Firmicute_51_9 organism_group=Firmicute
hypothetical protein; K02004 putative ABC transport system permease protein Tax=GWF2_Firmicutes_51_9_curated
hypothetical protein
13_1_40cm_2_scaffold_7_4
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(4315..5043)
DNA (729bp) protein (243aa)
Macrolide export ATP-binding/permease protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LIV4_THEBM
ABC transporter
ABC transporter {ECO:0000313|EMBL:AIF68441.1}; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus DY20341.;"
13_1_40cm_2_scaffold_7_5

Not on your lists

5144..5674
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-A16 RepID=UPI0003655A1B
Marine sediment metagenome DNA, contig: S06H3_L07525 {ECO:0000313|EMBL:GAI13412.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
13_1_40cm_2_scaffold_7_6
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5671..6348)
DNA (678bp) protein (226aa)
Rhomboid family protein; K07059 id=5042220 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
rhomboid family protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
13_1_40cm_2_scaffold_7_7
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

7472..12289
DNA (4818bp) protein (1606aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-J15 RepID=UPI000376A102
PKD domain-containing protein Tax=RBG_16_Euryarchaeota_68_13_curated
surface layer protein
13_1_40cm_2_scaffold_7_8

Not on your lists

12414..13352
DNA (939bp) protein (313aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:00
cyoE; protoheme IX farnesyltransferase (EC:2.5.1.-)
protoheme IX farnesyltransferase id=14427911 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_1_40cm_2_scaffold_7_9
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

Not on your lists

comp(13365..13967)
DNA (603bp) protein (201aa)
guaA-2; GMP synthase subunit A (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RBG_13_WOR_3_43_14_curated
GMP synthase (glutamine-hydrolyzing), amidotransferase subunit (EC:6.3.5.2)
Glutamine amidotransferase class-I n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CG88_KOSOT
13_1_40cm_2_scaffold_7_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(13977..15263)
DNA (1287bp) protein (429aa)
Putative aminotransferase n=1 Tax=Vulcanisaeta moutnovskia (strain 768-28) RepID=F0QTR3_VULM7 rbh
aminotransferase Tax=RBG_16_Archaea_50_20_curated
aminotransferase
13_1_40cm_2_scaffold_7_11
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

15304..16392
DNA (1089bp) protein (363aa)
Small GTP-binding protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIF3_NITGG
small GTP-binding protein Tax=RBG_13_Bathyarchaeota_38_9_curated
small GTP-binding protein
13_1_40cm_2_scaffold_7_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(16666..17421)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon Gpl RepID=T0LY68_9EURY
Uncharacterized protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_2_scaffold_7_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

17496..18542
DNA (1047bp) protein (349aa)
heat shock protein; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RBG_13_Bathyarchaeota_46_16b_curated
heat shock protein; K03799 heat shock protein HtpX [EC:3.4.24.-] id=14427605 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
heat shock protein
13_1_40cm_2_scaffold_7_14
unknown

Not on your lists

18544..18996
DNA (453bp) protein (151aa)

This feature has no annotations

13_1_40cm_2_scaffold_7_15
RBG_13_Chloroflexi_60_13_curated, Chloroflexi, Bacteria

Not on your lists

19180..19710
DNA (531bp) protein (177aa)
ubiquinone/menaquinone biosynthesis methyltransferase ubiE; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RBG_13_Chloroflexi_60_13_curated
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Marinobacter santoriniensis NKSG1 RepID=M7D316_9ALTE
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
13_1_40cm_2_scaffold_7_16
unknown

Not on your lists

comp(19769..20464)
DNA (696bp) protein (232aa)

This feature has no annotations

13_1_40cm_2_scaffold_7_17
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(20540..21076)
DNA (537bp) protein (179aa)
Nitroreductase n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KKQ6_9ARCH
Nitroreductase {ECO:0000313|EMBL:EGG42065.1}; TaxID=886738 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limni
nitroreductase
13_1_40cm_2_scaffold_7_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

21210..21839
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EJB0_9ARCH
hypothetical protein
NT5C domain containing protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_2_scaffold_7_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

21867..22277
DNA (411bp) protein (137aa)
Glycine cleavage system H protein n=1 Tax=Bacillus methanolicus MGA3 RepID=I3DUF9_BACMT
gcsH4; glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=RBG_16_Archaea_50_20_curated
gcvH; Glycine cleavage system H protein
13_1_40cm_2_scaffold_7_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

22425..25280
DNA (2856bp) protein (952aa)
putative ATP-dependent helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RBG_16_Archaea_50_20_curated
ATP dependent helicase, lhr family n=1 Tax=Halogranum salarium B-1 RepID=J3JHW5_9EURY
DEAD/H associated domain-containing protein
13_1_40cm_2_scaffold_7_21

Not on your lists

comp(25297..26196)
DNA (900bp) protein (300aa)
putative N-4 cytosine-specific methyltransferase (EC:2.1.1.113)
modification methylase n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B54648
Cytosine methylase, similar to N4-cytosine methylase {ECO:0000313|EMBL:CAH04249.1}; TaxID=285013 species="Viruses; dsDNA viruses, no RNA stage; Bicaudaviridae; unclassified Bicaudaviridae.;" source="S
13_1_40cm_2_scaffold_7_22
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

26746..28581
DNA (1836bp) protein (612aa)
PKD domain containing protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GF92_METPE
Uncharacterized protein {ECO:0000313|EMBL:AKB81073.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina b
PKD domain-containing protein
13_1_40cm_2_scaffold_7_23
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28691..30178)
DNA (1488bp) protein (496aa)
Pseudomonalisin {ECO:0000313|EMBL:KJL30718.1}; EC=3.4.21.100 {ECO:0000313|EMBL:KJL30718.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source=
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI0003702B8D
hypothetical protein
13_1_40cm_2_scaffold_7_24
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

30482..31048
DNA (567bp) protein (189aa)
Metallo-beta-lactamase family protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N315_9ARCH
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:BAJ46721.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarc
beta-lactamase domain protein
13_1_40cm_2_scaffold_7_25
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

31093..31539
DNA (447bp) protein (149aa)
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=RBG_16_Chloroflexi_68_14_curated
13_1_40cm_2_scaffold_7_26
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

31930..32328
DNA (399bp) protein (133aa)
Putative oxidoreductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RBG_16_Ignavibacteria_34_14_curated
methionine-R-sulfoxide reductase (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E729_METEZ
13_1_40cm_2_scaffold_7_27
unknown

Not on your lists

comp(32392..32772)
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_2_scaffold_7_28

Not on your lists

comp(32843..33838)
DNA (996bp) protein (332aa)
High-affinity nickel-transporter n=1 Tax=mine drainage metagenome RepID=T1D5S9_9ZZZZ
high-affinity nickel-transporter
High-affinity nickel-transporter {ECO:0000313|EMBL:EQD76844.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
13_1_40cm_2_scaffold_7_29
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

34112..34651
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5Z8H2_9CREN
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_2_scaffold_7_30
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

34656..35615
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RZ05_THEPD
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
Displaying items 1-30 of 57 in total

View Taxonomy