ggKbase home page

13_1_40cm_scaffold_21441

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_21441_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..519)
DNA (519bp) protein (173aa)
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
ATP-dependent protease subunit HslV id=2114303 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ATP-dependent protease peptidase subunit
13_1_40cm_scaffold_21441_2
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(589..1497)
DNA (909bp) protein (303aa)
xerC; site-specific recombinase; K03733 integrase/recombinase XerC Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Tyrosine recombinase XerC id=2114308 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
site-specific recombinase, XerC
13_1_40cm_scaffold_21441_3
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1626..2417
DNA (792bp) protein (264aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Hydrolase id=2114312 bin=GWD2_Deltaproteobacteria_55_8 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
OsmC-like protein
13_1_40cm_scaffold_21441_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2425..2835
DNA (411bp) protein (137aa)
id=2114318 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
id=2114318 Tax=GWD2_Deltaproteobacteria_55_8_curated
13_1_40cm_scaffold_21441_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2894..3376)
DNA (483bp) protein (161aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Major facilitator superfamily MFS_1 id=2114319 bin=GWD2_Deltaproteobacteria_55_8 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
major facilitator superfamily protein
13_1_40cm_scaffold_21441_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3373..4173)
DNA (801bp) protein (267aa)
sugar phosphate permease Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Major facilitator superfamily MFS_1 id=2114319 bin=GWD2_Deltaproteobacteria_55_8 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sugar phosphate permease
13_1_40cm_scaffold_21441_7
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4274..4828
DNA (555bp) protein (185aa)
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
Putative uncharacterized protein id=2114323 bin=GWD2_Deltaproteobacteria_55_8 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_scaffold_21441_8
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4942..5130
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. NIPH 973 RepID=N8QXW9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EXT51902.1}; TaxID=1310908 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/
hypothetical protein
13_1_40cm_scaffold_21441_9
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5549..5968)
DNA (420bp) protein (140aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] Tax=RIF
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase id=2114327 bin=GWD2_Deltaproteobacteria_55_8 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
13_1_40cm_scaffold_21441_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5972..6589)
DNA (618bp) protein (206aa)
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; K02501 glutamine amidotransferase [EC:2.4.2.-] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Imidazole glycerol phosphate synthase subunit HisH id=2114331 bin=GWD2_Deltaproteobacteria_55_8 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
13_1_40cm_scaffold_21441_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6586..6831)
DNA (246bp) protein (82aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Imidazoleglycerol-phosphate dehydratase id=2114335 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hisB; imidazoleglycerol-phosphate dehydratase
Displaying 11 items

View Taxonomy