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13_1_40cm_scaffold_13125

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_13125_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1..408
DNA (408bp) protein (136aa)
30S ribosomal protein S11 id=2042487 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
30S ribosomal protein S11
13_1_40cm_scaffold_13125_2
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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804..1079
DNA (276bp) protein (92aa)
30S ribosomal protein S4 id=2042483 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=GWD2_Deltaproteobacteria_55_8_curated
rpsD; 30S ribosomal protein S4
13_1_40cm_scaffold_13125_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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1102..1269
DNA (168bp) protein (56aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
DNA-directed RNA polymerase subunit alpha id=2042479 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DNA-directed RNA polymerase subunit alpha
13_1_40cm_scaffold_13125_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1214..2083
DNA (870bp) protein (290aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EFS7_GEOBB
rpoA; DNA-directed RNA polymerase subunit alpha
13_1_40cm_scaffold_13125_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2130..2615
DNA (486bp) protein (162aa)
50S ribosomal protein L17 id=2042471 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
50S ribosomal protein L17
13_1_40cm_scaffold_13125_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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2646..3077
DNA (432bp) protein (144aa)
Anti-ECFsigma factor, ChrR Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Anti-ECFsigma factor, ChrR id=1973288 bin=GWD2_Deltaproteobacteria_55_8 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_scaffold_13125_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3080..4999)
DNA (1920bp) protein (640aa)
two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative two-component hybrid sensor and regulator id=1929882 bin=GWD2_Deltaproteobacteria_55_8 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
two-component hybrid sensor and regulator
13_1_40cm_scaffold_13125_8
unknown

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comp(5048..5158)
DNA (111bp) protein (37aa)

This feature has no annotations

13_1_40cm_scaffold_13125_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5158..5352)
DNA (195bp) protein (65aa)
DNA binding domain, excisionase family, putative n=1 Tax=Ruegeria sp. R11 RepID=B7QXB0_9RHOB
DNA binding domain protein, excisionase family Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 9 items

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