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13_1_40cm_3_scaffold_1270

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1270_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2..700)
DNA (699bp) protein (233aa)
Low-specificity threonine aldolase id=4813750 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium FLS18 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alanine racemase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
alanine racemase domain-containing protein
13_1_40cm_3_scaffold_1270_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(697..1038)
DNA (342bp) protein (114aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4766715 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1270_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1046..1519)
DNA (474bp) protein (158aa)
Putative uncharacterized protein id=4766716 bin=GWA2_Methylomirabilis_73_35 species=Robiginitalea biformata genus=Robiginitalea taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_3_scaffold_1270_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1519..2214)
DNA (696bp) protein (232aa)
Beta-propeller domain-containing protein, methanol dehydrogenase id=4766717 bin=GWA2_Methylomirabilis_73_35 species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K06872 uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_3_scaffold_1270_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2276..2872)
DNA (597bp) protein (199aa)
LemA family protein id=4766718 bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
LemA family protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_3_scaffold_1270_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3046..3753
DNA (708bp) protein (236aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2780661 bin=GWA2_Methylomirabilis_73_35 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_1270_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3803..5008
DNA (1206bp) protein (402aa)
acyl-CoA dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acyl-CoA dehydrogenase domain protein id=2780651 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_3_scaffold_1270_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5013..6131
DNA (1119bp) protein (373aa)
acyl-CoA dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl-CoA dehydrogenase domain protein id=2780648 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_3_scaffold_1270_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6179..7291
DNA (1113bp) protein (371aa)
glucose dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glucose dehydrogenase (GDH) id=2780646 bin=GWA2_Methylomirabilis_73_35 species=Thermoproteus uzoniensis genus=Thermoproteus taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glucose dehydrogenase
13_1_40cm_3_scaffold_1270_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7288..8070
DNA (783bp) protein (261aa)
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55); K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
Enoyl-CoA hydratase/carnithine racemase id=2780641 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1270_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8072..9076
DNA (1005bp) protein (335aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4527585 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_1270_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9195..9812
DNA (618bp) protein (206aa)
Serine protease do-like (EC:3.4.21.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HtrA2 peptidase (EC:3.4.21.108)
Putative trypsin-like serine protease n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAG0_9RHOB
13_1_40cm_3_scaffold_1270_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10031..12673)
DNA (2643bp) protein (881aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14429401 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_1270_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12735..13754)
DNA (1020bp) protein (340aa)
glk; glucokinase (Glucose kinase) (EC:2.7.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glk; glucokinase (Glucose kinase) (EC:2.7.1.2)
Glucokinase (Glucose kinase) id=3398321 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1270_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13751..14728)
DNA (978bp) protein (326aa)
6-phosphogluconate dehydrogenase (gnd-like) (EC:1.1.1.44) Tax=GWA2_Rokubacteria_70_23_curated
6-phosphogluconate dehydrogenase (gnd-like) (EC:1.1.1.44)
6-phosphogluconate dehydrogenase n=1 Tax=Scytonema hofmanni RepID=UPI000348E80B
13_1_40cm_3_scaffold_1270_16
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(14739..14867)
DNA (129bp) protein (43aa)
talA; bifunctional transaldolase/phosoglucose isomerase (EC:2.2.1.2) Tax=CSP1_2_Dadabacteria
13_1_40cm_3_scaffold_1270_17
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(14864..15361)
DNA (498bp) protein (166aa)
talA; bifunctional transaldolase/phosoglucose isomerase (EC:2.2.1.2)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeo
Bifunctional transaldolase/phosoglucose isomerase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QNC7_9CYAN
13_1_40cm_3_scaffold_1270_18
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(15361..16050)
DNA (690bp) protein (230aa)
rpiA; ribose 5-phosphate isomerase (Phosphoriboisomerase A) (PRI) (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {E
Ribose-5-phosphate isomerase A n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHI2_9BACT
13_1_40cm_3_scaffold_1270_19
Cyanothece sp. PCC 8801, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

16166..17416
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. (strain PCC 8801) RepID=B7K3Q6_CYAP8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK65398.1}; TaxID=41431 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 8801) (Synec
13_1_40cm_3_scaffold_1270_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17425..18498
DNA (1074bp) protein (358aa)
hypothetical protein; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
putative carbamoylphosphate synthase large subunit, short form id=3398306 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_1270_21
unknown

Not on your lists

18564..18770
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_3_scaffold_1270_22
unknown

Not on your lists

18866..19000
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_3_scaffold_1270_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19001..21256)
DNA (2256bp) protein (752aa)
Adenylate/guanylate cyclase family protein,transcriptional regulatory protein,putative transcriptional regulator id=3398297 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_3_scaffold_1270_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21219..23021)
DNA (1803bp) protein (601aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Adenylate and Guanylate cyclase catalytic domain protein id=3408273 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two-component, sigma-54 specific, transcriptional regulator, Fis family
13_1_40cm_3_scaffold_1270_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23265..23738
DNA (474bp) protein (158aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_3_scaffold_1270_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23773..24036)
DNA (264bp) protein (88aa)
id=14626173 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626173 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_3_scaffold_1270_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24076..25098)
DNA (1023bp) protein (341aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4207979 bin=GWA2_Elusimicrobia_56_46 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
hypothetical protein
13_1_40cm_3_scaffold_1270_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(25445..25789)
DNA (345bp) protein (115aa)
ABC-type transporter, permease component: PepT family id=3695580 bin=GWC2_Methylomirabilis_70_24 species=Alcanivorax dieselolei genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dppC; PepT family ABC transporter permease Tax=GWA2_Rokubacteria_70_23_curated
dppC; PepT family ABC transporter permease
13_1_40cm_3_scaffold_1270_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25921..26967)
DNA (1047bp) protein (349aa)
aminotransferase class-III; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=3222459 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminotransferase class-III
Displaying 29 items

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