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13_1_40cm_3_scaffold_1854

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1854_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1..393
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Prochlorothrix hollandica RepID=UPI00034C6F4F
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_3_scaffold_1854_2
unknown

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467..802
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_3_scaffold_1854_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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799..2385
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A636_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
NYN domain, limkain-b1-type
13_1_40cm_3_scaffold_1854_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2641..3249
DNA (609bp) protein (203aa)
DNA-3-methyladenine glycosylase (EC:3.2.2.21); K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
mgh; 3-methyladenine DNA glycosylase (EC:3.2.2.-)
Putative 3-methyladenine DNA glycosylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A637_GEMAT
13_1_40cm_3_scaffold_1854_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3234..4364
DNA (1131bp) protein (377aa)
Zn-dependent dipeptidase, microsomal dipeptidase {ECO:0000313|EMBL:CDM65778.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CDM65778.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
M19 family peptidase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UKB3_MYXSD
M19 family peptidase
13_1_40cm_3_scaffold_1854_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(4348..5514)
DNA (1167bp) protein (389aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90144.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1854_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(5733..6062)
DNA (330bp) protein (110aa)
kbl; putative 2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
kbl; putative 2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
Putative 2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A638_GEMAT
13_1_40cm_3_scaffold_1854_8
unknown

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6187..7047
DNA (861bp) protein (287aa)

This feature has no annotations

13_1_40cm_3_scaffold_1854_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(6867..7895)
DNA (1029bp) protein (343aa)
threonine 3-dehydrogenase (EC:1.1.1.103); K00060 threonine 3-dehydrogenase [EC:1.1.1.103] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Threonine 3-dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A639_GEMAT
Alcohol dehydrogenase GroES domain protein
13_1_40cm_3_scaffold_1854_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(7928..8719)
DNA (792bp) protein (264aa)
putative oxidoreductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] id=14424802 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin1_lowGC organism_group=Unknown_CP
short-chain dehydrogenase/reductase SDR
13_1_40cm_3_scaffold_1854_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(8820..11771)
DNA (2952bp) protein (984aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00036FAB17
formate dehydrogenase subunit alpha
13_1_40cm_3_scaffold_1854_12
unknown

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11836..11928
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_3_scaffold_1854_13
unknown

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comp(12051..12248)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_3_scaffold_1854_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(12345..13232)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A642_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_1854_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13226..14104)
DNA (879bp) protein (293aa)
Cation diffusion facilitator family transporter n=1 Tax=Calothrix sp. PCC 6303 RepID=K9V7D3_9CYAN
cation diffusion facilitator family transporter Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cation diffusion facilitator family transporter
13_1_40cm_3_scaffold_1854_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14132..15214)
DNA (1083bp) protein (361aa)
SAM-dependent methyltransferase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXR5_RUBXD
S-adenosylmethionine-dependent methyltransferase
S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:AHG90154.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1854_17
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(15325..15702)
DNA (378bp) protein (126aa)
chorismate mutase; K06208 chorismate mutase [EC:5.4.99.5] Tax=RBG_16_Chloroflexi_63_12_curated
Chorismate mutase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UVT5_ROSS1
chorismate mutase
13_1_40cm_3_scaffold_1854_18
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15728..16321
DNA (594bp) protein (198aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5
Thiamine-phosphate synthase n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6FFP4_9DELT
thiE; thiamine-phosphate pyrophosphorylase
13_1_40cm_3_scaffold_1854_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16236..17306)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A647_GEMAT
aminodeoxychorismate lyase
Aminodeoxychorismate lyase {ECO:0000313|EMBL:AHG90157.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1854_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17303..17734)
DNA (432bp) protein (144aa)
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative Holliday junction resolvase (EC:3.1.-.-)
Putative Holliday junction resolvase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A648_GEMAT
13_1_40cm_3_scaffold_1854_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17731..18984)
DNA (1254bp) protein (418aa)
rho; transcription termination factor; K03628 transcription termination factor Rho Tax=RBG_16_Gemmatimonadetes_66_8_curated
transcription termination factor Rho
Transcription termination factor Rho id=1249870 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
13_1_40cm_3_scaffold_1854_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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19122..20252
DNA (1131bp) protein (377aa)
putative membrane-associated Zn-dependent protease Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative membrane-associated Zn-dependent protease
Peptidase M50 id=1803244 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1854_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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20423..20707
DNA (285bp) protein (95aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_1854_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

20707..20901
DNA (195bp) protein (65aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_1854_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(20982..22862)
DNA (1881bp) protein (627aa)
protein of unknown function DUF95 transmembrane
Uncharacterized protein {ECO:0000313|EMBL:AHG89993.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative uncharacterized protein id=1866195 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1854_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

22895..23776
DNA (882bp) protein (294aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_3_scaffold_1854_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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23836..24405
DNA (570bp) protein (190aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_3_scaffold_1854_28
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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24389..25666
DNA (1278bp) protein (426aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDY9_CHLTF
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_3_scaffold_1854_29
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

25624..26592
DNA (969bp) protein (323aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
ATPase AAA n=1 Tax=Serinicoccus profundi RepID=UPI000255E5F9
ATPase associated with various cellular activities AAA_3
13_1_40cm_3_scaffold_1854_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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26589..27917
DNA (1329bp) protein (443aa)
Putative conserved protein (Some members contain a von Willebrand factor type A (VWA) domain) id=1866192 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
protein of unknown function DUF58
Displaying items 1-30 of 32 in total

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