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13_1_40cm_3_scaffold_1910

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1910_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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2..538
DNA (537bp) protein (179aa)
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Thiamine-monophosphate kinase id=1946132 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
thiamine-monophosphate kinase
13_1_40cm_3_scaffold_1910_2
unknown

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comp(606..734)
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_3_scaffold_1910_3
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

753..1340
DNA (588bp) protein (196aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; K06898 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase id=1946134 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phosphoribosylaminoimidazole carboxylase-like protein
13_1_40cm_3_scaffold_1910_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1354..1674
DNA (321bp) protein (107aa)
id=1946136 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
id=1946136 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1910_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1658..2032
DNA (375bp) protein (125aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Protein archease id=1946137 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_3_scaffold_1910_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2042..3445
DNA (1404bp) protein (468aa)
Putative uncharacterized protein id=1946139 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
13_1_40cm_3_scaffold_1910_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3757..4872
DNA (1116bp) protein (372aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Reactivating factor for ethanolamine ammonia lyase id=1946143 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
hypothetical protein
13_1_40cm_3_scaffold_1910_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4872..5450
DNA (579bp) protein (193aa)
gmhA; phosphoheptose isomerase; K03271 D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
phosphoheptose isomerase (EC:5.-.-.-)
Phosphoheptose isomerase id=1946145 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1910_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5469..6416
DNA (948bp) protein (316aa)
Putative uncharacterized protein id=1946148 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
13_1_40cm_3_scaffold_1910_10
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6433..7533)
DNA (1101bp) protein (367aa)
MFS transporter id=1892707 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
major facilitator transporter Tax=GWD2_Deltaproteobacteria_55_8_curated
major facilitator transporter
13_1_40cm_3_scaffold_1910_11
unknown

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comp(7714..7812)
DNA (99bp) protein (33aa)

This feature has no annotations

13_1_40cm_3_scaffold_1910_12
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7826..8617
DNA (792bp) protein (264aa)
hypothetical protein; K09134 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Putative uncharacterized protein id=1803246 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_3_scaffold_1910_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8632..9093
DNA (462bp) protein (154aa)
zinc-binding CMP/dCMP deaminase; K01493 dCMP deaminase [EC:3.5.4.12] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
deoxycytidylate deaminase (EC:3.5.4.12)
CMP/dCMP deaminase, zinc-binding protein id=1803242 bin=GWD2_Deltaproteobacteria_55_8 species=Prosthecochloris vibrioformis genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1910_14
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9149..9478)
DNA (330bp) protein (110aa)
atpC2; H(+)-transporting two-sector ATPase (EC:3.6.3.14); K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
atpC2; H(+)-transporting two-sector ATPase (EC:3.6.3.14)
ATP synthase subunit c id=1803240 bin=GWD2_Deltaproteobacteria_55_8 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1910_15
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9551..10303)
DNA (753bp) protein (251aa)
atpB; ATP synthase F0 subunit A Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ATP synthase subunit a id=1803238 bin=GWD2_Deltaproteobacteria_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
ATP synthase F0, A subunit
13_1_40cm_3_scaffold_1910_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10303..10665)
DNA (363bp) protein (121aa)
id=1803237 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
id=1803237 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1910_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10665..10916)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Uncharacterized protein id=1803235 bin=GWD2_Deltaproteobacteria_55_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1910_18
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10956..11252)
DNA (297bp) protein (99aa)
Glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=1803233 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glutamate-1-semialdehyde-2,1-aminomutase
13_1_40cm_3_scaffold_1910_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11479..12144)
DNA (666bp) protein (222aa)
Glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hemL; glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase id=1803233 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1910_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12521..13852
DNA (1332bp) protein (444aa)
Chromosomal replication initiator protein DnaA id=1803230 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein Tax=GWD2_Deltaproteobacteria_55_8_curated
chromosomal replication initiation protein
13_1_40cm_3_scaffold_1910_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14080..15186
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta id=1803228 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
13_1_40cm_3_scaffold_1910_22
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15207..16070)
DNA (864bp) protein (288aa)
putative isocitrate lyase/carboxyphosphonoenolpyruvate phosphonomutase (EC:4.1.3.1)
Uncharacterized protein n=1 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4KRN1_9DELT
2,3-dimethylmalate lyase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
13_1_40cm_3_scaffold_1910_23
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16259..16636)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XLK0_SORCE
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
hypothetical protein
13_1_40cm_3_scaffold_1910_24
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16618..16911)
DNA (294bp) protein (98aa)
acetoin dehydrogenase (EC:1.1.1.303)
Uncharacterized protein n=1 Tax=Lactobacillus fermentum 3872 RepID=V7Z0H6_LACFE
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
13_1_40cm_3_scaffold_1910_25
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16908..17873)
DNA (966bp) protein (322aa)
4,5-dihydroxyphthalate decarboxylase (EC:4.1.1.55); K04102 4,5-dihydroxyphthalate decarboxylase [EC:4.1.1.55] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
4,5-dihydroxyphthalate decarboxylase (EC:4.1.1.55)
4,5-dihydroxyphthalate decarboxylase id=1803221 bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
13_1_40cm_3_scaffold_1910_26
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17962..18942
DNA (981bp) protein (327aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Putative uncharacterized protein id=1803219 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_1_40cm_3_scaffold_1910_27
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19085..19636)
DNA (552bp) protein (184aa)
class II aldolase/adducin family protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase id=2036013 bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia sp. Ch1-1 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
class II aldolase/adducin family protein
13_1_40cm_3_scaffold_1910_28
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19669..21201)
DNA (1533bp) protein (511aa)
Putative benzoate-CoA ligase BzlA (Fragment) id=2036011 bin=GWD2_Deltaproteobacteria_55_8 species=Clostridia bacterium enrichment culture clone BF genus=unknown taxon_order=unknown taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
benzoate-CoA ligase family Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
benzoate-CoA ligase family
13_1_40cm_3_scaffold_1910_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21278..22750)
DNA (1473bp) protein (491aa)
succinate-semialdehyde dehydrogenase (NAD(P)+); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
succinate-semialdehyde dehydrogenase (NAD(P)+) (EC:1.2.1.16)
Succinate-semialdehyde dehydrogenase (NAD(P)+) id=2036009 bin=GWD2_Deltaproteobacteria_55_8 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
13_1_40cm_3_scaffold_1910_30
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22927..24075
DNA (1149bp) protein (383aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX07255.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein id=5081769 bin=GWF1_Burkholderiales_GWF1_66_17 species=Mycobacterium rhodesiae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
amidohydrolase 2
Displaying items 1-30 of 33 in total

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