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13_1_40cm_3_scaffold_2259

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2259_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(244..1674)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Odoribacter sp. CAG:788 RepID=R5NRZ9_9PORP
Putative aminopeptidase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
peptidase M28
13_1_40cm_3_scaffold_2259_2
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


comp(1671..3464)
DNA (1794bp) protein (598aa)
Methionine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00098}; EC=6.1.1.10 {ECO:0000255|HAMAP-Rule:MF_00098};; Methionyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00098}; Short=MetRS {ECO:0000255|HAMAP-R
Methionine--tRNA ligase n=2 Tax=Chloroflexus RepID=SYM_CHLAA
methionyl-tRNA synthetase
13_1_40cm_3_scaffold_2259_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

3487..4284
DNA (798bp) protein (266aa)
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00037C7CA0
TatD family hydrolase
13_1_40cm_3_scaffold_2259_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

4338..5255
DNA (918bp) protein (306aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein id=14630168 bin=bin8_Chloro species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
13_1_40cm_3_scaffold_2259_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

5461..5718
DNA (258bp) protein (86aa)
acetyltransferase
bamK; GCN5-related N-acetyltransferase BamK Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
bamK; GCN5-related N-acetyltransferase BamK id=24577278 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_3_scaffold_2259_6
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5873..6409
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI000375B8DF
regulatory protein TetR
Regulatory protein TetR {ECO:0000313|EMBL:ADU50596.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Ther
13_1_40cm_3_scaffold_2259_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6430..7791
DNA (1362bp) protein (454aa)
Uncharacterized conserved protein n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SJ73_HAHCH id=5224937 bin=16ft_combo_ws3_JS1 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_3_scaffold_2259_8
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7845..8660
DNA (816bp) protein (272aa)
Putative alpha/beta hydrolase fold n=1 Tax=uncultured marine microorganism HF4000_APKG5H11 RepID=B3T8K3_9ZZZZ
putative hydrolase Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
putative hydrolase
13_1_40cm_3_scaffold_2259_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8660..9382
DNA (723bp) protein (241aa)
phenylacetic acid degradation protein paaA Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Probable phenylacetic acid degradation protein paaA id=2043722 bin=GWD2_Deltaproteobacteria_55_8 species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phenylacetic acid degradation protein paaA
13_1_40cm_3_scaffold_2259_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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9388..10998
DNA (1611bp) protein (537aa)
benzoate-CoA ligase family Tax=GWA2_Rokubacteria_73_35_curated
rxy:Rxyl_1759 benzoate-CoA ligase id=1247853 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
benzoate-CoA ligase family
13_1_40cm_3_scaffold_2259_11
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11071..11535
DNA (465bp) protein (155aa)
(2Fe-2S)-binding domain protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2] Tax=GWD2_Deltaproteobacteria_55_8_curated
hcrC; 4-hydroxybenzoyl-CoA reductase, 2Fe-2S iron-sulfur cluster subunit C (EC:1.3.7.9)
(2Fe-2S)-binding domain protein id=1757936 bin=GWD2_Deltaproteobacteria_55_8 species=Kosmotoga olearia genus=Kosmotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_2259_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

11532..12386
DNA (855bp) protein (285aa)
hcrB; 4-hydroxybenzoyl-CoA reductase FAD-binding subunit B (EC:1.3.99.20); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Nicotine dehydrogenase chain A id=1757934 bin=GWD2_Deltaproteobacteria_55_8 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
molybdopterin dehydrogenase, FAD-binding protein
13_1_40cm_3_scaffold_2259_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

12383..12832
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000381A4A5
carbon monoxide dehydrogenase subunit G Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_3_scaffold_2259_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

12829..14940
DNA (2112bp) protein (704aa)
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein id=2099473 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
13_1_40cm_3_scaffold_2259_15
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14989..16011
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HGB0020 RepID=S2ZGF1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD63029.1}; TaxID=1078086 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
cupin
13_1_40cm_3_scaffold_2259_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(16000..16332)
DNA (333bp) protein (111aa)
PemK-like protein; K07171 mRNA interferase [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
mRNA interferase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SL21_9BACT
transcriptional modulator of MazE/toxin, MazF
13_1_40cm_3_scaffold_2259_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(16336..16587)
DNA (252bp) protein (84aa)
Putative Ribbon-helix-helix protein, copG family protein n=1 Tax=uncultured marine microorganism HF4000_APKG5H11 RepID=B3T8I8_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_3_scaffold_2259_18
unknown

Not on your lists

comp(16849..17112)
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_3_scaffold_2259_19
unknown

Not on your lists

17193..17459
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_3_scaffold_2259_20
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17851..19536)
DNA (1686bp) protein (562aa)
Thiamine pyrophosphate enzyme domain protein TPP-binding id=1761205 bin=GWD2_Deltaproteobacteria_55_8 species=Marinobacter algicola genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ilvB; acetolactate synthase large subunit Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ilvB; acetolactate synthase large subunit
13_1_40cm_3_scaffold_2259_21
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19587..20627)
DNA (1041bp) protein (347aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=2119343 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_1_40cm_3_scaffold_2259_22
Streptomyces sp. SPB78, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20702..21739
DNA (1038bp) protein (346aa)
Putative uncharacterized protein n=1 Tax=Streptomyces sp. SPB78 RepID=D9UQU3_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EFK98109.1}; TaxID=591157 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SP
hypothetical protein
13_1_40cm_3_scaffold_2259_23

Not on your lists

comp(21673..21960)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 70 RepID=E3T6I8_9BACT
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADC35932.1}; TaxID=698392 species="Bacteria; environmental samples.;" source="uncultured bacterium 70.;"
13_1_40cm_3_scaffold_2259_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

22179..22466
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Streptomyces sp. HmicA12 RepID=UPI0003644F80
hypothetical protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
hypothetical protein
13_1_40cm_3_scaffold_2259_25
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(22480..23958)
DNA (1479bp) protein (493aa)
ubiD_R; UbiD-like subunit of potential (de) carboxylase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
UbiD-like subunit of potential (De) carboxylase id=1904936 bin=GWD2_Deltaproteobacteria_55_8 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ubiD_R; UbiD-like subunit of potential (de) carboxylase
13_1_40cm_3_scaffold_2259_26
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23998..25116)
DNA (1119bp) protein (373aa)
Putrescine transport ATP-binding protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI000364F20F
ABC transporter
13_1_40cm_3_scaffold_2259_27
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25116..25721)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003682E4B
binding-protein-dependent transport systems inner membrane component Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
binding-protein-dependent transport systems inner membrane component
13_1_40cm_3_scaffold_2259_28
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(25718..26770)
DNA (1053bp) protein (351aa)
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein id=14631202 bin=bin9_gal15 species=Pseudomonas agarici genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein Tax=CSP1_3_Armatimonadetes
binding-protein-dependent transport systems inner membrane component
13_1_40cm_3_scaffold_2259_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26795..27877)
DNA (1083bp) protein (361aa)
putative ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Iron-binding periplasmic protein id=1927455 bin=GWD2_Deltaproteobacteria_55_8 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC-type Fe3+ transport system, substrate binding component
13_1_40cm_3_scaffold_2259_30
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27941..28492
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Bacillus fordii RepID=UPI00037AA3E7
nitrate transporter protein CmpC; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
nitrate/sulfonate/bicarbonate ABC transporter ATPase
Displaying 30 items

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