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13_1_40cm_3_scaffold_224

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_224_1
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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comp(1..264)
DNA (264bp) protein (88aa)
NADP-dependent malic enzyme n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8J1_9EURY
NADP-dependent malic enzyme
NADP-dependent malic enzyme {ECO:0000313|EMBL:AGN27237.1}; TaxID=1295009 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" so
13_1_40cm_3_scaffold_224_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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933..1910
DNA (978bp) protein (326aa)
Polyprenyl synthetase n=1 Tax=Thermoproteus uzoniensis (strain 768-20) RepID=F2L1Q5_THEU7
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
polyprenyl synthetase
13_1_40cm_3_scaffold_224_3
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(1914..2732)
DNA (819bp) protein (273aa)
Isopentenyl phosphate kinase n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B6E2_METTP
aspartate/glutamate/uridylate kinase; K06981 Tax=RBG_13_Bathyarchaeota_38_9_curated
aspartate/glutamate/uridylate kinase
13_1_40cm_3_scaffold_224_4
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

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3050..3790
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z1M4_METPS
hypothetical protein Tax=RBG_16_Bathyarchaeota_57_9_curated
hypothetical protein
13_1_40cm_3_scaffold_224_5
RBG_16_Archaea_50_20_curated, Archaea

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3813..4874
DNA (1062bp) protein (354aa)
Recombinase RecA n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZRG9_THELI
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
recombinase RecA
13_1_40cm_3_scaffold_224_6
RBG_16_Archaea_50_20_curated, Archaea

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comp(4977..5822)
DNA (846bp) protein (282aa)
Hypothetical conserved protein n=1 Tax=uncultured crenarchaeote RepID=H5SJ42_9CREN
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_3_scaffold_224_7
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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5895..7115
DNA (1221bp) protein (407aa)
Putative uncharacterized protein n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8ABP4_IGNH4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU82346.1}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospitalis (s
13_1_40cm_3_scaffold_224_8
RBG_16_Archaea_50_20_curated, Archaea

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7136..9007
DNA (1872bp) protein (624aa)
DNA-binding response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_3_scaffold_224_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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9040..9384
DNA (345bp) protein (115aa)
Marine sediment metagenome DNA, contig: S12H4_L00878 Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_3_scaffold_224_10
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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comp(9358..9795)
DNA (438bp) protein (146aa)
peptidyl-tRNA hydrolase; K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] Tax=RBG_16_Bathyarchaeota_48_13_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=2 Tax=Sulfolobus solfataricus RepID=PTH_SULSO
13_1_40cm_3_scaffold_224_11
unknown

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9982..10266
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_3_scaffold_224_12
RBG_16_Archaea_50_20_curated, Archaea

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10459..11208
DNA (750bp) protein (250aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
proteasome alpha subunit (EC:3.4.25.1)
Proteasome alpha subunit n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Y4_9ARCH
13_1_40cm_3_scaffold_224_13
RBG_16_Archaea_50_20_curated, Archaea

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11205..11894
DNA (690bp) protein (230aa)
Putative ribosome maturation protein SDO1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH0_NITGG
ribosome maturation protein SDO1 Tax=RBG_16_Archaea_50_20_curated
rRNA metabolism protein, SBDS family
13_1_40cm_3_scaffold_224_14
RBG_16_Archaea_50_20_curated, Archaea

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11907..12620
DNA (714bp) protein (238aa)
Exosome complex component Rrp4 n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECM8_PYRF1
KH domain containing protein; K03679 exosome complex component RRP4 Tax=RBG_16_Archaea_50_20_curated
KH domain containing protein
13_1_40cm_3_scaffold_224_15
RBG_16_Archaea_50_20_curated, Archaea

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12598..13365
DNA (768bp) protein (256aa)
Exosome complex component Rrp41 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH18_PYRYC
rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=RBG_16_Archaea_50_20_curated
exosome complex exonuclease Rrp41
13_1_40cm_3_scaffold_224_16
RBG_16_Archaea_50_20_curated, Archaea

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13366..14184
DNA (819bp) protein (273aa)
Exosome complex component Rrp42 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH19_PYRYC
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=RBG_16_Archaea_50_20_curated
exosome complex RNA-binding protein Rrp42
13_1_40cm_3_scaffold_224_17
RBG_16_Archaea_50_20_curated, Archaea

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14184..14621
DNA (438bp) protein (146aa)
50S ribosomal protein L37Ae n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AI24_PYRYC
rpl37ae; 50S ribosomal protein L37Ae; K02921 large subunit ribosomal protein L37Ae Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L37Ae
13_1_40cm_3_scaffold_224_18
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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14566..14928
DNA (363bp) protein (121aa)
Uncharacterized protein conserved in archaea n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAE9_METCZ
Uncharacterized protein conserved in archaea {ECO:0000313|EMBL:AFC99623.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="M
hypothetical protein; K09741 hypothetical protein
13_1_40cm_3_scaffold_224_19
RBG_16_Archaea_50_20_curated, Archaea

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14930..15295
DNA (366bp) protein (122aa)
pfdB; prefoldin, subunit beta Tax=RBG_16_Archaea_50_20_curated
prefoldin, chaperonin cofactor; K04798 prefoldin beta subunit id=14427074 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
pfdB; prefoldin, subunit beta
13_1_40cm_3_scaffold_224_20
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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15307..16332
DNA (1026bp) protein (342aa)
Predicted phosphoesterase, DHH family n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BKC6_HYPBU
DHH family phosphoesterase; K06881 phosphoesterase RecJ domain-containing protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
DHH family phosphoesterase
13_1_40cm_3_scaffold_224_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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16391..17254
DNA (864bp) protein (288aa)
Cobalt/nickel ABC transporter ATP-binding protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z3_9ARCH
ABC transporter; K02006 cobalt/nickel transport system ATP-binding protein Tax=RBG_13_Bathyarchaeota_38_9_curated
cobalt/nickel ABC transporter ATP-binding protein
13_1_40cm_3_scaffold_224_22
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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17251..18093
DNA (843bp) protein (281aa)
ABC transporter related n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RY35_THEPD
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
ABC transporter-like protein
13_1_40cm_3_scaffold_224_23
RBG_16_Archaea_50_20_curated, Archaea

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18170..18850
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-N13 RepID=UPI00036687F1
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
cobalt/nickel ABC transporter permease
13_1_40cm_3_scaffold_224_24
unknown

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19238..19636
DNA (399bp) protein (133aa)

This feature has no annotations

13_1_40cm_3_scaffold_224_25
unknown

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19754..20251
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_3_scaffold_224_26
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

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20434..21459
DNA (1026bp) protein (342aa)
Flap endonuclease 1 n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RXA5_THEPD
flap structure-specific endonuclease Tax=RBG_13_Bathyarchaeota_52_12_curated
flap endonuclease-1
13_1_40cm_3_scaffold_224_27
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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21456..23057
DNA (1602bp) protein (534aa)
ATP-dependent DNA ligase (EC:6.5.1.1)
DNA ligase n=1 Tax=Thermofilum sp. 1910b RepID=S5ZV79_9CREN rbh
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_40cm_3_scaffold_224_28
RBG_16_Archaea_50_20_curated, Archaea

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23108..23752
DNA (645bp) protein (215aa)
ATP binding protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIS2_9EURY
hypothetical protein; K06927 Tax=RBG_16_Archaea_50_20_curated
putative protein MJ0570
13_1_40cm_3_scaffold_224_29
RBG_16_Archaea_50_20_curated, Archaea

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comp(23726..25021)
DNA (1296bp) protein (432aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase (EC:3.5.4.28); K12960 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] Tax=RBG_16_Archaea_50_20_curated
5-methylthioadenosine/S-adenosylhomocysteine deaminase (EC:3.5.4.28)
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7Q3_METSW
13_1_40cm_3_scaffold_224_30
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(25045..25659)
DNA (615bp) protein (205aa)
hexulose-6-phosphate isomerase (EC:5.-.-.-); K08094 6-phospho-3-hexuloisomerase [EC:5.3.1.27] Tax=RBG_13_Bathyarchaeota_38_9_curated
hexulose-6-phosphate isomerase (EC:5.-.-.-)
Hexulose-6-phosphate isomerase n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=A3DLI7_STAMF
Displaying items 1-30 of 33 in total

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