ggKbase home page

13_1_40cm_3_scaffold_2843

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2843_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..880)
DNA (879bp) protein (293aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide TPR_2 repeat protein id=3877307 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_2843_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(892..2487)
DNA (1596bp) protein (532aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydro
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] id=14625435 bin=bin7_NC10_sister species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
13_1_40cm_3_scaffold_2843_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2484..2990)
DNA (507bp) protein (169aa)
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=GWA2_Rokubacteria_73_35_curated
Phosphoribosylglycinamide formyltransferase, folate-dependent id=4153845 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phosphoribosylglycinamide formyltransferase
13_1_40cm_3_scaffold_2843_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3104..4135)
DNA (1032bp) protein (344aa)
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase id=1817203 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_2843_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4137..5549)
DNA (1413bp) protein (471aa)
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14) id=14625428 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14)
13_1_40cm_3_scaffold_2843_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5530..7701)
DNA (2172bp) protein (724aa)
purL; phosphoribosylformylglycinamidine synthase subunit PurL (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 2 id=3877242 bin=GWF2_Methylomirabilis_70_14 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_2843_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7708..8421)
DNA (714bp) protein (238aa)
phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=GWA2_Rokubacteria_73_35_curated
Phosphoribosylformylglycinamidine synthase 2 id=2306167 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoribosylformylglycinamidine synthase I
13_1_40cm_3_scaffold_2843_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8434..8703)
DNA (270bp) protein (90aa)
Phosphoribosylformylglycinamidine synthase protein id=2306168 bin=GWA2_Methylomirabilis_73_35 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yexA; phosphoribosylformylglycinamidine synthase protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
yexA; phosphoribosylformylglycinamidine synthase protein
13_1_40cm_3_scaffold_2843_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8700..9473)
DNA (774bp) protein (258aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase id=2306169 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_2843_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9488..10786)
DNA (1299bp) protein (433aa)
adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2] id=14625424 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
adenylosuccinate lyase
13_1_40cm_3_scaffold_2843_11
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10862..11485)
DNA (624bp) protein (208aa)
Putative phosphatase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ77_9RHIZ
Phosphoglycolate phosphatase {ECO:0000313|EMBL:KFE68128.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source=
HAD family hydrolase
13_1_40cm_3_scaffold_2843_12
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11430..12404)
DNA (975bp) protein (325aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1KJ07_9ACTO
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EKX60373.1}; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 9
alpha/beta hydrolase
13_1_40cm_3_scaffold_2843_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12425..13690)
DNA (1266bp) protein (422aa)
insulinase family protein (EC:3.4.24.-)
ymxG; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ymxG; hypothetical protein id=14625423 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
13_1_40cm_3_scaffold_2843_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13702..14382)
DNA (681bp) protein (227aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) id=14625422 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pnpA; polynucleotide phosphorylase (EC:2.7.7.8)
13_1_40cm_3_scaffold_2843_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(14346..15242)
DNA (897bp) protein (299aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) id=14625422 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
13_1_40cm_3_scaffold_2843_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(15893..16162)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=1723473 bin=GWA2_Methylomirabilis_73_35 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S15
13_1_40cm_3_scaffold_2843_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16303..17220)
DNA (918bp) protein (306aa)
FMN adenylyltransferase; riboflavin kinase (EC:2.7.7.2 2.7.1.26); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Riboflavin biosynthesis protein RibF id=1723429 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin kinase/FMN adenylyltransferase
13_1_40cm_3_scaffold_2843_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17183..18112)
DNA (930bp) protein (310aa)
tRNA pseudouridine synthase b; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=GWA2_Rokubacteria_73_35_curated
tRNA pseudouridine synthase B id=1723427 bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA pseudouridine synthase B
13_1_40cm_3_scaffold_2843_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18109..19107)
DNA (999bp) protein (333aa)
Exopolyphosphatase-like enzyme id=1723426 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exopolyphosphatase-related proteins; K06881 phosphoesterase RecJ domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
phosphoesterase RecJ domain-containing protein
13_1_40cm_3_scaffold_2843_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19104..19457)
DNA (354bp) protein (118aa)
Ribosome-binding factor A id=1723425 bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome-binding factor A Tax=GWA2_Rokubacteria_73_35_curated
rbfA; ribosome-binding factor A
13_1_40cm_3_scaffold_2843_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19457..19747)
DNA (291bp) protein (97aa)
Putative uncharacterized protein id=4153820 bin=GWC2_Methylomirabilis_70_16 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K09764 hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_3_scaffold_2843_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19772..21142)
DNA (1371bp) protein (457aa)
infB; translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infB; translation initiation factor IF-2
13_1_40cm_3_scaffold_2843_23
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21383..21670
DNA (288bp) protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:AGZ50889.1}; TaxID=557599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii ATCC 12478.;
13_1_40cm_3_scaffold_2843_24
unknown

Not on your lists

21749..22162
DNA (414bp) protein (138aa)

This feature has no annotations

13_1_40cm_3_scaffold_2843_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22676..23998)
DNA (1323bp) protein (441aa)
NusA antitermination factor; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NusA antitermination factor id=1723421 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
NusA antitermination factor
13_1_40cm_3_scaffold_2843_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24023..24490)
DNA (468bp) protein (156aa)
hypothetical protein; K09748 ribosome maturation factor RimP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosome maturation factor RimP id=1723420 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome maturation protein RimP
13_1_40cm_3_scaffold_2843_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24448..26247)
DNA (1800bp) protein (600aa)
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) id=14625411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15)
13_1_40cm_3_scaffold_2843_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26250..26582)
DNA (333bp) protein (111aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ferredoxin id=4153760 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ferredoxin
13_1_40cm_3_scaffold_2843_29
unknown

Not on your lists

comp(26582..26686)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 29 items

View Taxonomy