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13_1_40cm_3_scaffold_294

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Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_294_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3..551
DNA (549bp) protein (183aa)
Putative Thiol-disulfide oxidoreductase id=3666472 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative thiol-disulfide oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
resA; thiol-disulfide oxidoreductase resA
13_1_40cm_3_scaffold_294_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

548..1288
DNA (741bp) protein (247aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c biogenesis protein CcdA id=3666473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccdA; cytochrome c biogenesis protein CcdA
13_1_40cm_3_scaffold_294_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1293..2192
DNA (900bp) protein (300aa)
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homoserine kinase id=3666474 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
homoserine kinase
13_1_40cm_3_scaffold_294_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2251..3417
DNA (1167bp) protein (389aa)
Major facilitator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Major facilitator id=1801598 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Major facilitator
13_1_40cm_3_scaffold_294_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3452..4585
DNA (1134bp) protein (378aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase id=3666475 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_294_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4663..5055
DNA (393bp) protein (131aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, LysR family id=3666476 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_294_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5055..5963
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family id=3666476 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
LysR family transcriptional regulator
13_1_40cm_3_scaffold_294_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6071..6991
DNA (921bp) protein (307aa)
selenide, water dikinase; K01008 selenide, water dikinase [EC:2.7.9.3] Tax=GWA2_Rokubacteria_73_35_curated
Selenide, water dikinase id=3666477 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
selenide, water dikinase
13_1_40cm_3_scaffold_294_9
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7169..8284
DNA (1116bp) protein (372aa)
Transglutaminase-like enzyme, predicted cysteine protease n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQJ2_9BURK
Transglutaminase-like enzyme, predicted cysteine protease {ECO:0000313|EMBL:EHR71667.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" sourc
transglutaminase domain-containing protein
13_1_40cm_3_scaffold_294_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8307..8876
DNA (570bp) protein (190aa)
thiol-disulfide isomerase-like protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
thiol-disulfide isomerase-like protein
Uncharacterized protein id=1374516 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
13_1_40cm_3_scaffold_294_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8887..9165)
DNA (279bp) protein (93aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3735761 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_3_scaffold_294_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9268..10311
DNA (1044bp) protein (348aa)
Glycosyl transferase, group 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=14626576 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
Glycosyl transferase, group 1
13_1_40cm_3_scaffold_294_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10638..11651
DNA (1014bp) protein (338aa)
MoxR-like ATPases (EC:3.6.3.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
MoxR-like ATPases (EC:3.6.3.-) id=14626575 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
MoxR-like ATPases (EC:3.6.3.-)
13_1_40cm_3_scaffold_294_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11667..13118
DNA (1452bp) protein (484aa)
id=3287913 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626574 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_3_scaffold_294_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13133..14020
DNA (888bp) protein (296aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3887908 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_3_scaffold_294_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14017..18390
DNA (4374bp) protein (1458aa)
chloride channel Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Conserved putative chloride channel id=3887967 bin=GWC2_Methylomirabilis_70_24 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
chloride channel
13_1_40cm_3_scaffold_294_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

18387..19742
DNA (1356bp) protein (452aa)
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625358 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_40cm_3_scaffold_294_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19975..20967
DNA (993bp) protein (331aa)
galT; galactose-1-phosphate uridylyltransferase (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=GWA2_Rokubacteria_73_35_curated
Galactose-1-phosphate uridylyltransferase id=3714124 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
galactose-1-phosphate uridylyltransferase
13_1_40cm_3_scaffold_294_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21229..21657
DNA (429bp) protein (143aa)
putative transcription factor IscR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative transcription factor IscR id=14625361 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
AsnC family transcriptional regulator
13_1_40cm_3_scaffold_294_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

21689..22492
DNA (804bp) protein (268aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] id=14625362 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
icsS2; cysteine desulfurase IscS (EC:2.8.1.7)
13_1_40cm_3_scaffold_294_21
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

22489..22872
DNA (384bp) protein (128aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=3735869 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_3_scaffold_294_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

22886..23296
DNA (411bp) protein (137aa)
FeS cluster assembly scaffold IscU Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
iscU; iron-sulfur cluster assembly protein IscU; K04488 nitrogen fixation protein NifU and related proteins id=14625363 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
iscU; iron-sulfur cluster assembly protein IscU
13_1_40cm_3_scaffold_294_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23317..23607
DNA (291bp) protein (97aa)
iscA; iron-sulfur cluster assembly protein IscA; K13628 iron-sulfur cluster assembly protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Iron-sulfur cluster assembly protein IscA id=3714096 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-sulfur cluster assembly protein IscA
13_1_40cm_3_scaffold_294_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23675..24277
DNA (603bp) protein (201aa)
hscB; co-chaperone protein HscB; K04082 molecular chaperone HscB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Co-chaperone protein HscB (Hsc20) id=3714094 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hscB; co-chaperone protein HscB
13_1_40cm_3_scaffold_294_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24255..26084
DNA (1830bp) protein (610aa)
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chaperone protein HscA (Hsc66) id=3735880 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hscA; chaperone protein HscA
13_1_40cm_3_scaffold_294_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

26084..26407
DNA (324bp) protein (108aa)
fdx; ferredoxin, 2Fe-2S type, ISC system; K04755 ferredoxin, 2Fe-2S Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Ferredoxin, 2Fe-2S type, ISC system id=3714016 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ferredoxin
13_1_40cm_3_scaffold_294_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26404..26607
DNA (204bp) protein (68aa)
Putative uncharacterized protein id=3714014 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_3_scaffold_294_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26631..26855)
DNA (225bp) protein (75aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3714012 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_294_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(26855..27211)
DNA (357bp) protein (119aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3714010 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_294_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27216..27539)
DNA (324bp) protein (108aa)
Putative uncharacterized protein id=3714008 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
Displaying items 1-30 of 82 in total

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