ggKbase home page

13_1_40cm_3_scaffold_319

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_319_1
unknown

Not on your lists

1..99
DNA (99bp) protein (33aa)

This feature has no annotations

13_1_40cm_3_scaffold_319_2
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

128..1093
DNA (966bp) protein (322aa)
hypothetical protein id=14632187 bin=bin9_gal15 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
hypothetical protein Tax=CSP1_3_Armatimonadetes
hypothetical protein
13_1_40cm_3_scaffold_319_3
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

1137..1898
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXY9_RUBXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG03739.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrob
13_1_40cm_3_scaffold_319_4
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1901..2923
DNA (1023bp) protein (341aa)
agmatinase (EC:3.5.3.11)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI000373371F
Uncharacterized protein {ECO:0000313|EMBL:EYT55290.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
13_1_40cm_3_scaffold_319_5
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

Not on your lists

2920..4146
DNA (1227bp) protein (409aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] Tax=RBG_16_Chloroflexi_58_14_curated
Putative Xaa-Pro dipeptidase n=1 Tax=Clostridium sp. D5 RepID=F0Z086_9CLOT
peptidase M24
13_1_40cm_3_scaffold_319_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

4143..5102
DNA (960bp) protein (320aa)
Oxidoreductase domain protein; K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI00037AC468
dehydrogenase
13_1_40cm_3_scaffold_319_7
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5118..5942
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00037DDE67
Xylose isomerase {ECO:0000313|EMBL:KEP24606.1}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
xylose isomerase
13_1_40cm_3_scaffold_319_8

Not on your lists

5939..6379
DNA (441bp) protein (147aa)
oxidoreductase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F034
Uncharacterized protein {ECO:0000313|EMBL:KKO11400.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
oxidoreductase domain-containing protein
13_1_40cm_3_scaffold_319_9
unknown

Not on your lists

6436..7059
DNA (624bp) protein (208aa)

This feature has no annotations

13_1_40cm_3_scaffold_319_10
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

7094..8149
DNA (1056bp) protein (352aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2PFI2_STRVO
protein GutB2 Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
molecular chaperone GroES
13_1_40cm_3_scaffold_319_11
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

8194..9174
DNA (981bp) protein (327aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TTA3_9CHLR
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:EFH83654.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="
Sugar phosphate isomerases/epimerases
13_1_40cm_3_scaffold_319_12
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9444..10625
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Salinispora arenicola RepID=UPI000381A3D0 rbh
Cytochrome P450 {ECO:0000313|EMBL:KJR12693.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
ferredoxin
13_1_40cm_3_scaffold_319_13
unknown

Not on your lists

comp(10497..10811)
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_40cm_3_scaffold_319_14
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11210..11917)
DNA (708bp) protein (236aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paenibacillus lactis 154 RepID=G4H927_9BACL
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EHB68362.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis
oxidoreductase protein
13_1_40cm_3_scaffold_319_15
Arthrobacter sp. MWB30, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11959..12261)
DNA (303bp) protein (101aa)
thermoresistant glucokinase family carbohydrate kinase (EC:2.7.1.12)
Shikimate kinase {ECO:0000313|EMBL:KIA72570.1}; EC=2.7.4.14 {ECO:0000313|EMBL:KIA72570.1};; TaxID=1534409 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arth
Carbohydrate kinase, thermoresistant glucokinase family n=1 Tax=Frankia sp. CN3 RepID=G6HH72_9ACTO
13_1_40cm_3_scaffold_319_16
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

12535..13977
DNA (1443bp) protein (481aa)
D-lactate dehydrogenase (EC:1.1.2.4) Tax=RBG_13_Chloroflexi_68_17_curated
FAD linked oxidase domain protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEH5_THET1
FAD linked oxidase domain-containing protein
13_1_40cm_3_scaffold_319_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(14130..15194)
DNA (1065bp) protein (355aa)
tartrate dehydrogenase (EC:4.1.1.73)
Tartrate dehydrogenase {ECO:0000313|EMBL:ACZ40918.1}; EC=4.1.1.73 {ECO:0000313|EMBL:ACZ40918.1};; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae;
Tartrate dehydrogenase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAS5_SPHTD
13_1_40cm_3_scaffold_319_18
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15201..16013)
DNA (813bp) protein (271aa)
Methyltransferase type 11 n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UBK5_CELFN rbh
Methyltransferase type 11 {ECO:0000313|EMBL:KGM01744.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
type 11 methyltransferase
13_1_40cm_3_scaffold_319_19
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16037..16429
DNA (393bp) protein (131aa)
PPOX class probable F420-dependent enzyme n=1 Tax=Mycobacterium smegmatis JS623 RepID=L0INZ3_MYCSM
PPOX class probable F420-dependent enzyme
PPOX class probable F420-dependent enzyme {ECO:0000313|EMBL:AGB20583.1}; TaxID=710686 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sme
13_1_40cm_3_scaffold_319_20
Halanaerobium hydrogeniformans, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16426..17751)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036B2BD6 rbh
SAF domain-containing protein
SAF domain protein {ECO:0000313|EMBL:ADQ15706.1}; TaxID=656519 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium hydrogeniformans (Ha
13_1_40cm_3_scaffold_319_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17859..19214
DNA (1356bp) protein (452aa)
Putative sugar uptake ABC transporter periplasmic solute-binding protein id=2228895 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_3_scaffold_319_22
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19240..20172
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DMD8_BRAJP
ABC transporter permease {ECO:0000313|EMBL:KGT73303.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japon
ABC transporter permease
13_1_40cm_3_scaffold_319_23
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20173..21063
DNA (891bp) protein (297aa)
Inner membrane ABC transporter permease protein ycjP n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0R5_THERP
Sugar ABC transporter permease {ECO:0000313|EMBL:ETX02896.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY
inner membrane ABC transporter permease YcjP
13_1_40cm_3_scaffold_319_24
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21173..22231
DNA (1059bp) protein (353aa)
ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component n=2 Tax=Caldanaerobacter subterraneus RepID=Q8R8L6_THETN
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGG80247.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaer
MalK; ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component
13_1_40cm_3_scaffold_319_25
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(22241..22807)
DNA (567bp) protein (189aa)
putative transferase protein n=1 Tax=Saccharopolyspora spinosa RepID=UPI0002378890
putative transferase protein
Probable transferase protein {ECO:0000313|EMBL:ACM06204.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strai
13_1_40cm_3_scaffold_319_26
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22914..23693)
DNA (780bp) protein (260aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.20)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=2 Tax=Saccharopolyspora erythraea RepID=A4F7L7_SACEN
Uncharacterized protein {ECO:0000313|EMBL:KEI43409.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula
13_1_40cm_3_scaffold_319_27
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23690..24667)
DNA (978bp) protein (326aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase n=3 Tax=Saccharopolyspora erythraea RepID=A4FIJ9_SACEN
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:EQD87852.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythr
13_1_40cm_3_scaffold_319_28
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24702..25460
DNA (759bp) protein (253aa)
Short-chain dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JMB8_9PROT
short-chain alcohol dehydrogenase Tax=RBG_16_Betaproteobacteria_64_18_curated
short-chain alcohol dehydrogenase
13_1_40cm_3_scaffold_319_29
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25526..26692
DNA (1167bp) protein (389aa)
L-carnitine dehydratase/bile acid-inducible protein F (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:CAM03012.1}; EC=2.8.3.16 {ECO:0000313|EMBL:CAM03012.1};; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseu
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Saccharopolyspora erythraea RepID=A4FG37_SACEN
13_1_40cm_3_scaffold_319_30
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26689..27507
DNA (819bp) protein (273aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YGG1_MOBAS
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:EAS49264.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source=
Displaying items 1-30 of 34 in total

View Taxonomy