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13_1_40cm_3_scaffold_396

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_396_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..706
DNA (705bp) protein (235aa)
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (EC:3.5.2.9)
Hydantoinase/oxoprolinase id=4840603 bin=GWC2_Methylomirabilis_70_16 species=Methylobacterium nodulans genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_3_scaffold_396_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

735..1913
DNA (1179bp) protein (393aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Major facilitator superfamily MFS_1 id=4712290 bin=GWC2_Methylomirabilis_70_16 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
major facilitator superfamily transporter
13_1_40cm_3_scaffold_396_3
unknown

Not on your lists

comp(1918..2259)
DNA (342bp) protein (114aa)

This feature has no annotations

13_1_40cm_3_scaffold_396_4
unknown

Not on your lists

comp(2267..2416)
DNA (150bp) protein (50aa)

This feature has no annotations

13_1_40cm_3_scaffold_396_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

2442..3212
DNA (771bp) protein (257aa)
Aldo/keto reductase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AS1_SOLUE
aldo/keto reductase Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
aldo/keto reductase
13_1_40cm_3_scaffold_396_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3315..4109
DNA (795bp) protein (265aa)
enoyl-CoA hydratase (EC:4.2.1.17)
paaG; enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Enoyl-CoA hydratase id=1746157 bin=GWA2_Methylomirabilis_73_35 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_396_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4109..4774
DNA (666bp) protein (222aa)
TENA/THI-4 family; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional activator, TenA family id=3021538 bin=GWF2_Methylomirabilis_70_14 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TENA/THI-4 family
13_1_40cm_3_scaffold_396_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4779..5264
DNA (486bp) protein (162aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1746153 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_396_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5431..6105
DNA (675bp) protein (225aa)
OmpA/MotB domain protein id=1746151 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
OmpA/MotB domain-containing protein
13_1_40cm_3_scaffold_396_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6155..7033)
DNA (879bp) protein (293aa)
haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Alpha/beta hydrolase fold protein id=1746149 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
haloalkane dehalogenase
13_1_40cm_3_scaffold_396_11
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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7285..8487
DNA (1203bp) protein (401aa)
major facilitator transporter id=14632909 bin=bin9_gal15 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
major facilitator transporter Tax=CSP1_3_Armatimonadetes
major facilitator transporter
13_1_40cm_3_scaffold_396_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8484..9173
DNA (690bp) protein (230aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1746145 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_396_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9227..9526
DNA (300bp) protein (100aa)
Putative transcriptional regulator, ArsR family protein id=4759445 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
arsR; putative arsenical resistance operon repressor Tax=GWC2_Rokubacteria_70_16_curated
ArsR family transcriptional regulator
13_1_40cm_3_scaffold_396_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9526..9846
DNA (321bp) protein (107aa)
id=4895587 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4895587 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_3_scaffold_396_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9996..10280
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1746143 bin=GWA2_Methylomirabilis_73_35 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_396_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10440..11465
DNA (1026bp) protein (342aa)
sugar phosphate permease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sugar phosphate permease id=3708852 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar phosphate permease
13_1_40cm_3_scaffold_396_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11488..11781
DNA (294bp) protein (98aa)
Putative thioredoxin id=1746135 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative thioredoxin Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_3_scaffold_396_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11797..12108
DNA (312bp) protein (104aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c biogenesis protein, transmembrane region id=1746132 bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ahpC/TSA family protein
13_1_40cm_3_scaffold_396_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12121..13074
DNA (954bp) protein (318aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfoxide reductase catalytic subunit YedY id=1746038 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_1_40cm_3_scaffold_396_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13371..13979
DNA (609bp) protein (203aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_1_40cm_3_scaffold_396_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14030..15274
DNA (1245bp) protein (415aa)
phosphonoacetate hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phosphonoacetate hydrolase id=1746034 bin=GWA2_Methylomirabilis_73_35 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphonoacetate hydrolase
13_1_40cm_3_scaffold_396_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15276..16625
DNA (1350bp) protein (450aa)
peptidase, m16 (pitrilysin) family (EC:3.4.24.-); K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
M16B family peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase id=2874868 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_3_scaffold_396_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16622..17908
DNA (1287bp) protein (429aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
putative Zn-dependent peptidase id=2640536 bin=GWC2_Methylomirabilis_70_24 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_3_scaffold_396_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17912..18142)
DNA (231bp) protein (77aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3461019 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_396_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18385..19230
DNA (846bp) protein (282aa)
Putative lipoprotein id=3461021 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipoprotein Tax=GWA2_Rokubacteria_73_35_curated
lipoprotein
13_1_40cm_3_scaffold_396_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19232..20167
DNA (936bp) protein (312aa)
Putative uncharacterized protein id=2475294 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_3_scaffold_396_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20359..21708
DNA (1350bp) protein (450aa)
Putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGE3_9BACT
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_1_40cm_3_scaffold_396_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21978..23309
DNA (1332bp) protein (444aa)
Pc22g03720 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3461025 bin=GWA2_Methylomirabilis_73_35 species=Leishmania mexicana genus=Leishmania taxon_order=Kinetoplastida taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_396_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23320..24885
DNA (1566bp) protein (522aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator receiver modulated metal dependent phosphohydrolase id=3461027 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Response regulator receiver modulated metal dependent phosphohydrolase
13_1_40cm_3_scaffold_396_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24882..25262
DNA (381bp) protein (127aa)
spo0F; stage 0 sporulation protein F (EC:2.7.3.-); K02490 two-component system, response regulator, stage 0 sporulation protein F Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sporulation initiation phosphotransferase F (Stage 0 sporulation protein F) id=3461031 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Displaying items 1-30 of 36 in total

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