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13_1_40cm_3_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 202 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_40_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2..385
DNA (384bp) protein (128aa)
Chaperonin, 10 kDa n=1 Tax=uncultured marine bacterium Ant4D5 RepID=Q2PXZ9_9BACT
groES; putative 10 kDa chaperonin Tax=RBG_16_Gemmatimonadetes_66_8_curated
Chaperonin Cpn10
13_1_40cm_3_scaffold_40_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

389..706
DNA (318bp) protein (106aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_40_3
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

770..1945
DNA (1176bp) protein (392aa)
ATP-dependent DNA helicase n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NHA8_GLOVI
recQ; ATP-dependent DNA helicase
ATP-dependent DNA helicase {ECO:0000313|EMBL:BAC90570.1}; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).
13_1_40cm_3_scaffold_40_4
bacterium UASB270, Bacteria

Not on your lists

comp(2066..3109)
DNA (1044bp) protein (348aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK57045.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
13_1_40cm_3_scaffold_40_5
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3450..4712
DNA (1263bp) protein (421aa)
serine--glyoxylate transaminase (EC:2.6.1.45)
Serine--glyoxylate transaminase {ECO:0000313|EMBL:ACA20808.1}; EC=2.6.1.45 {ECO:0000313|EMBL:ACA20808.1};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobact
Serine--glyoxylate transaminase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UC57_METS4
13_1_40cm_3_scaffold_40_6
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4709..5683
DNA (975bp) protein (325aa)
Malyl-CoA lyase {ECO:0000313|EMBL:EYD78103.1}; EC=4.1.3.24 {ECO:0000313|EMBL:EYD78103.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubel
Malyl-CoA lyase (EC:4.1.3.24)
Malyl-CoA lyase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00038040BE
13_1_40cm_3_scaffold_40_7
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5688..6863
DNA (1176bp) protein (392aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558};
malate--CoA ligase subunit beta n=1 Tax=Rhodocyclaceae RepID=UPI00037CFC58
malate--CoA ligase subunit beta
13_1_40cm_3_scaffold_40_8
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6860..7774
DNA (915bp) protein (305aa)
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SKX0_METPP
13_1_40cm_3_scaffold_40_9
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7771..8751
DNA (981bp) protein (327aa)
D-isomer specific 2-hydroxyacid dehydrogenase family protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q608T2_METCA rbh
2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
2-hydroxyacid dehydrogenase
13_1_40cm_3_scaffold_40_10
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8748..11462
DNA (2715bp) protein (905aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkh
Phosphoenolpyruvate carboxylase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCZ3_METS4
phosphoenolpyruvate carboxylase
13_1_40cm_3_scaffold_40_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11480..12700
DNA (1221bp) protein (407aa)
Acyl-CoA dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A933_GEMAT
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:AHG90877.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_40_12
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(12697..14847)
DNA (2151bp) protein (717aa)
prolyl oligopeptidase (EC:3.4.21.26)
prolyl endopeptidase n=1 Tax=Chlorogloeopsis RepID=UPI000300DF20
Prolyl endopeptidase {ECO:0000313|EMBL:KIF32544.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
13_1_40cm_3_scaffold_40_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

15128..16633
DNA (1506bp) protein (502aa)
cafA; ribonuclease G (EC:3.1.-.-); K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cafA; ribonuclease G (EC:3.1.-.-)
Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A932_GEMAT
13_1_40cm_3_scaffold_40_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


16736..17056
DNA (321bp) protein (107aa)
50S ribosomal protein L21 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A931_GEMAT
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
50S ribosomal protein L21
13_1_40cm_3_scaffold_40_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


17065..17337
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437) RepID=K9Y0C5_STAC7
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
LSU ribosomal protein L27P
13_1_40cm_3_scaffold_40_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17334..18542)
DNA (1209bp) protein (403aa)
Imidazolonepropionase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y3F7_9PROT rbh
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AHG90871.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_40_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18539..19978)
DNA (1440bp) protein (480aa)
amidohydrolase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5895F
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AHG90870.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_40_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(19999..22083)
DNA (2085bp) protein (695aa)
peptidase, m16 (pitrilysin) family (EC:3.4.24.-) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
peptidase M16 domain-containing protein id=12557819 bin=CNBR_ACIDO species=Brevundimonas subvibrioides genus=Brevundimonas taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
M16 family peptidase
13_1_40cm_3_scaffold_40_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(22113..23447)
DNA (1335bp) protein (445aa)
Peptidase S16B family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN4_GEMAT
Predicted Zn-dependent peptidase {ECO:0000313|EMBL:CDM66642.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptidase S16B family protein
13_1_40cm_3_scaffold_40_20
unknown

Not on your lists

comp(23450..24214)
DNA (765bp) protein (255aa)

This feature has no annotations

13_1_40cm_3_scaffold_40_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(24183..25046)
DNA (864bp) protein (288aa)
Amidohydrolase 2 n=1 Tax=mine drainage metagenome RepID=T1BXN0_9ZZZZ
amidohydrolase; K07045 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
amidohydrolase 2
13_1_40cm_3_scaffold_40_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25067..25924)
DNA (858bp) protein (286aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LTX8_HALO1
3-hydroxyacyl-CoA dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_40_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(25921..26610)
DNA (690bp) protein (230aa)
glycerophosphoryl diester phosphodiesterase family protein; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Glycerophosphoryl diester phosphodiesterase family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A928_GEMAT
glycerophosphoryl diester phosphodiesterase family protein
13_1_40cm_3_scaffold_40_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(26607..27731)
DNA (1125bp) protein (375aa)
PhaF protein; K15512 benzoyl-CoA 2,3-dioxygenase component B [EC:1.14.12.21] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Benzoyl-CoA oxygenase component B id=1975393 bin=GWD2_Deltaproteobacteria_55_8 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
benzoyl-CoA oxygenase subunit beta
13_1_40cm_3_scaffold_40_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(27731..28486)
DNA (756bp) protein (252aa)
enoyl-CoA hydratase n=1 Tax=Duganella zoogloeoides RepID=UPI00037ABE1D
enoyl-CoA hydratase/isomerase Tax=RBG_16_Gemmatimonadetes_66_8_curated
phenylacetate degradation, enoyl-CoA hydratase paaB
13_1_40cm_3_scaffold_40_26
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(28486..29670)
DNA (1185bp) protein (395aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RI8_SYMTH
13_1_40cm_3_scaffold_40_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(29667..31094)
DNA (1428bp) protein (476aa)
NAD-dependent aldehyde dehydrogenase Tax=RBG_16_Gemmatimonadetes_66_8_curated
Aldehyde Dehydrogenase id=1250363 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
NAD-dependent aldehyde dehydrogenase
13_1_40cm_3_scaffold_40_28
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(31091..31906)
DNA (816bp) protein (272aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.17) Tax=RBG_16_Gemmatimonadetes_66_8_curated
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=uncultured bacterium A1Q1_fos_2037 RepID=L7W1I7_9BACT
13_1_40cm_3_scaffold_40_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31913..32506)
DNA (594bp) protein (198aa)
transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
TetR-family transcriptional regulator id=1804082 bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TetR family transcriptional regulator
13_1_40cm_3_scaffold_40_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

32612..33163
DNA (552bp) protein (184aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A927_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase ECF-type sigma factor
Displaying items 1-30 of 202 in total

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