ggKbase home page

13_1_40cm_3_scaffold_434

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_434_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

1..588
DNA (588bp) protein (196aa)
Rad51
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein id=14623880 bin=bin5_DeltaP species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin5_DeltaP organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_434_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

692..2686
DNA (1995bp) protein (665aa)
polB2; DNA polymerase B (EC:2.7.7.7) Tax=RBG_16_Archaea_50_20_curated
DNA polymerase elongation subunit (family B) (EC:2.7.7.7)
DNA polymerase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKE2_NITGG
13_1_40cm_3_scaffold_434_3
unknown

Not on your lists

2734..2868
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2919..3812)
DNA (894bp) protein (298aa)
PREDICTED: serine racemase-like isoform X3 n=1 Tax=Aplysia californica RepID=UPI0003593F8F
Pyridoxal-5'-phosphate-dependent protein beta subunit
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:AHG92280.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_434_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

3900..4277
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Mucispirillum schaedleri ASF457 RepID=V2QGE2_9BACT
hypothetical protein; K07567 TdcF protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_434_6
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(4311..5306)
DNA (996bp) protein (332aa)
Putative glucanase n=1 Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4N4L2_KITSK
putative cell surface uncharacterized protein related to type IV pili
Putative cell surface uncharacterized protein related to type IV pili {ECO:0000313|EMBL:AIC15154.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaerace
13_1_40cm_3_scaffold_434_7
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5429..6310
DNA (882bp) protein (294aa)
Peptidase A4 family protein (EC:3.4.23.19)
Peptidase A4 family protein {ECO:0000313|EMBL:AKB44257.1}; EC=3.4.23.19 {ECO:0000313|EMBL:AKB44257.1};; TaxID=1434123 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcin
hypothetical protein n=1 Tax=Streptomyces prunicolor RepID=UPI000376212D
13_1_40cm_3_scaffold_434_8
unknown

Not on your lists

6427..6909
DNA (483bp) protein (161aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_9
unknown

Not on your lists

6912..7367
DNA (456bp) protein (152aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_10
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(7364..7747)
DNA (384bp) protein (128aa)
hypothetical protein Tax=RBG_16_Planctomycetes_59_8_curated
13_1_40cm_3_scaffold_434_11
unknown

Not on your lists

8927..9262
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_12
unknown

Not on your lists

comp(9447..9704)
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_trna_1
unknown

Not on your lists

10161..10278
DNA (118bp)
transferRNA
13_1_40cm_3_scaffold_434_13
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

Not on your lists

10380..10976
DNA (597bp) protein (199aa)
tmk; dTMP kinase (EC:2.7.4.9)
Probable thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1410606 species="Archaea; Thaumarchae
thymidylate kinase id=14428027 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_1_40cm_3_scaffold_434_14
unknown

Not on your lists

comp(10993..11586)
DNA (594bp) protein (198aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

11938..12216
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Sulfolobales archaeon Acd1 RepID=UPI00036F9E47
hypothetical protein; K09721 hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_3_scaffold_434_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12295..13203
DNA (909bp) protein (303aa)
hypothetical protein, partial n=1 Tax=crenarchaeote SCGC AAA261-N23 RepID=UPI00036633C3
Uncharacterized protein {ECO:0000313|EMBL:ETW96585.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_1_40cm_3_scaffold_434_17
unknown

Not on your lists

13428..13718
DNA (291bp) protein (97aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_18
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

Not on your lists

13715..14668
DNA (954bp) protein (318aa)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IDS6_ACIB4
ATPase AAA
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:ADD08156.1}; ATPase, AAA family, putative {ECO:0000313|EMBL:EDY35578.1}; TaxID=439481 species="Archaea; Euryarchaeota; Acidul
13_1_40cm_3_scaffold_434_19
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

14678..15949
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AGL0_PYRYC
hypothetical protein Tax=RBG_16_KB1_OP1_55_9_curated
hypothetical protein
13_1_40cm_3_scaffold_434_20
unknown

Not on your lists

15964..16557
DNA (594bp) protein (198aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_21
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

16636..16923
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N6R0_9ARCH
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ47979.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum
13_1_40cm_3_scaffold_434_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(16918..17274)
DNA (357bp) protein (119aa)
Hypothetical conserved protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N2P4_9ARCH
Sjogrens syndrome scleroderma autoantigen 1; K07143 UPF0148 protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_3_scaffold_434_23
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

17514..19733
DNA (2220bp) protein (740aa)
ATPase AAA n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TC18_9EURY
AAA family ATPase, CDC48 subfamily
AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:AIF84648.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Cand
13_1_40cm_3_scaffold_434_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

20552..20809
DNA (258bp) protein (86aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI00036F1ABF
DNA-binding protein Tax=RBG_16_Archaea_50_20_curated
albA; DNA/RNA-binding protein albA
13_1_40cm_3_scaffold_434_25
unknown

Not on your lists

21265..21534
DNA (270bp) protein (90aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_26
unknown

Not on your lists

21537..21797
DNA (261bp) protein (87aa)

This feature has no annotations

13_1_40cm_3_scaffold_434_trna_2
unknown

Not on your lists

21872..21992
DNA (121bp)
transferRNA
13_1_40cm_3_scaffold_434_27
Sulfolobales archaeon AZ1, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(22084..24483)
DNA (2400bp) protein (800aa)
Probable aminopeptidase 2 n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=APE2_SULTO
Peptidase M1 membrane alanine aminopeptidase {ECO:0000313|EMBL:EWG07574.1}; TaxID=1326980 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; unclassified Sulfolobales.;" source="Sulfolobales
aminopeptidase
13_1_40cm_3_scaffold_434_28
unknown

Not on your lists

comp(24524..24664)
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying items 1-30 of 33 in total

View Taxonomy