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13_1_40cm_3_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_55_1
unknown

Not on your lists

2..265
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_3_scaffold_55_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

351..923
DNA (573bp) protein (191aa)
AsnC family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
MarR family transcriptional regulator id=14429881 bin=bin3_NC10 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
MarR family transcriptional regulator
13_1_40cm_3_scaffold_55_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1040..1546
DNA (507bp) protein (169aa)
putative transcription termination/antitermination factor NusG Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Putative Transcription termination/antitermination factor NusG id=4775526 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative transcription termination/antitermination factor NusG
13_1_40cm_3_scaffold_55_4
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

1570..3090
DNA (1521bp) protein (507aa)
Putative dehydrogenase n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P664_DESSD rbh
putative dehydrogenase Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
putative dehydrogenase
13_1_40cm_3_scaffold_55_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

3100..4242
DNA (1143bp) protein (381aa)
putative l-2-hydroxyglutarate oxidase (EC:1.1.99.2)
Putative L-2-hydroxyglutarate oxidase {ECO:0000313|EMBL:CBK42714.1}; EC=1.1.99.2 {ECO:0000313|EMBL:CBK42714.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.
Putative L-2-hydroxyglutarate oxidase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PHH7_9BACT
13_1_40cm_3_scaffold_55_6
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

4245..5237
DNA (993bp) protein (331aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:AFY41466.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AFY41466.1};; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. P
UDP-glucose 4-epimerase n=1 Tax=Nostoc sp. PCC 7107 RepID=K9Q8K5_9NOSO rbh
13_1_40cm_3_scaffold_55_7
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5248..6396
DNA (1149bp) protein (383aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W269_BORPA rbh
Putative spore coat polysaccharide biosynthesis protein SpsC {ECO:0000313|EMBL:KCB34833.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordet
DegT/DnrJ/EryC1/StrS aminotransferase
13_1_40cm_3_scaffold_55_8
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6402..8306
DNA (1905bp) protein (635aa)
asparagine synthase (EC:6.3.5.4) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Asparagine synthetase n=2 Tax=Achromobacter xylosoxidans C54 RepID=E5UG34_ALCXX rbh
asparagine synthase
13_1_40cm_3_scaffold_55_9
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8303..9367
DNA (1065bp) protein (355aa)
Uncharacterized protein n=2 Tax=Bordetella parapertussis RepID=K0M7X0_BORPB
Methyltransferase domain protein {ECO:0000313|EMBL:KCB35652.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella h
hypothetical protein
13_1_40cm_3_scaffold_55_10
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9412..10803
DNA (1392bp) protein (464aa)
Putative uncharacterized protein BbLPS1.07 n=1 Tax=Bordetella bronchiseptica RepID=O87980_BORBO
wbmO; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCN20917.1}; Flags: Fragment;; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bor
13_1_40cm_3_scaffold_55_11
unknown

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10831..12021
DNA (1191bp) protein (397aa)

This feature has no annotations

13_1_40cm_3_scaffold_55_12
unknown

Not on your lists

12320..12487
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_3_scaffold_55_13
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

12477..13556
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Nostoc sp. PCC 7107 RepID=K9Q7Z4_9NOSO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFY41473.1}; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. PCC 7107.;"
13_1_40cm_3_scaffold_55_14
Leptospira noguchii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

13610..14362
DNA (753bp) protein (251aa)
Formyl transferase domain protein n=3 Tax=Leptospira noguchii RepID=M6I0G8_9LEPT
Methionyl-tRNA formyltransferase {ECO:0000256|SAAS:SAAS00043681}; TaxID=1193053 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira noguchii str. 200103403
methionyl-tRNA formyltransferase
13_1_40cm_3_scaffold_55_15
R_OD1_Moranbacteria_55_24, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

14386..15399
DNA (1014bp) protein (338aa)
Methyltransferase type 11 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G6E6_CHLAD
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Moranbacteria_55_24_curated
type 11 methyltransferase
13_1_40cm_3_scaffold_55_16
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15474..16574
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Geovibrio thiophilus RepID=UPI0003B6881F
Uncharacterized protein {ECO:0000313|EMBL:CDF45053.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp
radical SAM domain-containing protein
13_1_40cm_3_scaffold_55_17
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16610..17773
DNA (1164bp) protein (388aa)
Teichoic acids export ATP-binding protein TagH {ECO:0000313|EMBL:EXI69601.1}; EC=3.6.3.40 {ECO:0000313|EMBL:EXI69601.1};; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatu
ABC transporter ATP-binding protein n=1 Tax=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) RepID=Q7WR26_BORBR rbh
wbmN; ABC transporter ATP-binding protein
13_1_40cm_3_scaffold_55_18
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17770..18993
DNA (1224bp) protein (408aa)
ABC transporter ATP-binding protein n=4 Tax=Bordetella RepID=Q79G81_BORBR rbh
wbmM; ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KDD60031.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetel
13_1_40cm_3_scaffold_55_19
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18990..19781
DNA (792bp) protein (264aa)
ABC transporter integral membrane protein n=1 Tax=Bordetella bronchiseptica Bbr77 RepID=K4T9A8_BORBO
wbmL; ABC transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=519 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertu
13_1_40cm_3_scaffold_55_20
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19818..20498
DNA (681bp) protein (227aa)
Uncharacterized protein n=2 Tax=Bordetella parapertussis RepID=K0M7W9_BORPB
WbqC-like protein family protein {ECO:0000313|EMBL:EXI69603.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp.
hypothetical protein
13_1_40cm_3_scaffold_55_21
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20533..21822
DNA (1290bp) protein (430aa)
Uncharacterized protein n=2 Tax=Bordetella parapertussis RepID=K0M9U3_BORPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ47457.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertus
13_1_40cm_3_scaffold_55_22
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21822..22826
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Geovibrio thiophilus RepID=UPI0003B5FDF1 rbh
Methyltransferase domain protein {ECO:0000313|EMBL:KCB35652.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella h
hypothetical protein
13_1_40cm_3_scaffold_55_23
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

22829..24193
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000367C2F5
wbmJ; bi-functional glycosyltransferase Tax=RBG_13_Nitrospirae_39_12_curated
wbmJ; bi-functional glycosyltransferase
13_1_40cm_3_scaffold_55_24
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

24194..25486
DNA (1293bp) protein (431aa)
Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6J4_9CHLA id=126710 bin=ACD79 species=Parachlamydia acanthamoebae genus=Parachlamydia taxon_order=Chlamydiales taxon_class=Chlamydiia phylum=Chlamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
hypothetical protein Tax=RBG_13_Nitrospirae_39_12_curated
hypothetical protein
13_1_40cm_3_scaffold_55_25
Methanoculleus bourgensis, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

25536..26600
DNA (1065bp) protein (355aa)
wecB3; UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CCJ37014.2}; EC=5.1.3.14 {ECO:0000313|EMBL:CCJ37014.2};; TaxID=1201294 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Metha
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LNE4_METBM rbh
13_1_40cm_3_scaffold_55_26
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26635..28563
DNA (1929bp) protein (643aa)
asnB; asparagine synthetase 1; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] Tax=RBG_16_Deltaproteobacteria_47_11_curated
Asparagine synthetase n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8KY43_PARAV rbh
asnB; asparagine synthetase 1
13_1_40cm_3_scaffold_55_27
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28560..29507
DNA (948bp) protein (316aa)
hypothetical protein; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RBG_16_Deltaproteobacteria_47_11_curated
Uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8KVF0_PARAV
hypothetical protein
13_1_40cm_3_scaffold_55_28
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29534..30583
DNA (1050bp) protein (350aa)
Nucleotide sugar epimerase/dehydratase n=5 Tax=Bordetella RepID=K4QN52_BORBO rbh
wbmF; nucleotide sugar epimerase/dehydratase Tax=RBG_16_Deltaproteobacteria_47_11_curated
wbmF; nucleotide sugar epimerase/dehydratase
13_1_40cm_3_scaffold_55_29
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30596..31762
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Thermus islandicus RepID=UPI0003B4190B rbh
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
13_1_40cm_3_scaffold_55_30
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31762..33777
DNA (2016bp) protein (672aa)
asparagine synthase (EC:6.3.5.4)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:ACU91335.1}; EC=6.3.5.4 {ECO:0000313|EMBL:ACU91335.1};; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrio
Asparagine synthetase n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LP19_DESBD rbh
Displaying items 1-30 of 41 in total

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